Factsheet for TraesCS6D01G239700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G172000.1
TraesCS3B01G202800.2
TraesCS3D01G178500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	TraesCS3A01G172000.1	AT4G02150.1	21798944
AT1G63970.1	TraesCS3B01G202800.2	AT4G02150.1	21798944
AT1G63970.1	TraesCS3D01G178500.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G258500.1	Wheat	plastid	97.72	96.4
HORVU6Hr1G065960.1	Barley	plastid	94.98	90.83
VIT_02s0025g00370.t01	Wine grape	cytosol	31.05	85.0
OQU85630	Sorghum	plastid	86.76	84.44
Zm00001d017608_P001	Maize	plastid	85.84	83.56
GSMUA_Achr5P03350_001	Banana	plastid	76.71	73.04
Os02t0680600-01	Rice	plastid	90.87	72.36
GSMUA_Achr4P27230_001	Banana	plastid	76.71	71.49
CDX93899	Canola	mitochondrion	42.92	68.12
PGSC0003DMT400031768	Potato	plastid	68.95	67.11
CDY08344	Canola	plastid	68.04	64.78
CDY38210	Canola	plastid	68.49	64.38
Bra027770.1-P	Field mustard	plastid	68.49	64.38
KRH27891	Soybean	nucleus, plastid	66.67	64.32
AT1G63970.1	Thale cress	plastid	67.58	64.07
Bra027672.1-P	Field mustard	plastid	68.04	63.95
CDY34390	Canola	plastid	67.58	63.25
CDY25551	Canola	plastid	67.12	62.82
Solyc08g081570.2.1	Tomato	plastid	69.86	59.77
VIT_02s0025g00380.t01	Wine grape	plastid	38.81	50.6
Zm00001d051458_P002	Maize	extracellular, mitochondrion	87.67	50.26
KRH25933	Soybean	plastid	37.44	47.67

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	MapMan:9.1.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114
InterPro:IPR036571	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542
ScanProsite:PS01350	PANTHER:PTHR43181	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	EnsemblPlantsGene:TraesCS6D01G239700	EnsemblPlants:TraesCS6D01G239700.1
TIGR:cd00554	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:340467155..340469455

Molecular Weight (calculated)

23353.4 Da

IEP (calculated)

8.519

GRAVY (calculated)

-0.033

Length

219 amino acids

Sequence
(BLAST)

001: MASASSLFLA SPTTAPRTRT PSSPCPARPS LRPRRPSLAV AAALQAEHQP AVAAAPKPPA LPFRVGHGFD LHRLEPGLPL IIGGISIPHD RGCDAHSDGD
101: VLLHCVVDAI LGALGLPDIG QIFPDTDPRW KGADSCVFMR EAVKLMHQAG YELGNLDATL ILQKPKISPF KETIRSNLCE LLGADPSVVN IKAKTHEKVD
201: SLGENRSIAA HTVVLLMRK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.