Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27891 | Soybean | nucleus, plastid | 57.56 | 43.61 |
| AT1G63970.1 | Thale cress | plastid | 54.65 | 40.69 |
| GSMUA_Achr5P03350_001 | Banana | plastid | 52.91 | 39.57 |
| PGSC0003DMT400031768 | Potato | plastid | 51.74 | 39.56 |
| Zm00001d017608_P001 | Maize | plastid | 50.58 | 38.67 |
| Bra027770.1-P | Field mustard | plastid | 51.16 | 37.77 |
| CDY38210 | Canola | plastid | 51.16 | 37.77 |
| TraesCS6D01G239700.1 | Wheat | plastid | 47.67 | 37.44 |
| CDY08344 | Canola | plastid | 50.0 | 37.39 |
| OQU85630 | Sorghum | plastid | 48.84 | 37.33 |
| HORVU6Hr1G065960.1 | Barley | plastid | 49.42 | 37.12 |
| TraesCS6A01G258500.1 | Wheat | plastid | 47.67 | 36.94 |
| GSMUA_Achr4P27230_001 | Banana | plastid | 50.0 | 36.6 |
| CDY25551 | Canola | plastid | 49.42 | 36.32 |
| Bra027672.1-P | Field mustard | plastid | 48.84 | 36.05 |
| CDY34390 | Canola | plastid | 48.84 | 35.9 |
| Solyc08g081570.2.1 | Tomato | plastid | 52.33 | 35.16 |
| Os02t0680600-01 | Rice | plastid | 50.58 | 31.64 |
| CDX93899 | Canola | mitochondrion | 23.26 | 28.99 |
| Zm00001d051458_P002 | Maize | extracellular, mitochondrion | 48.26 | 21.73 |
| HORVU0Hr1G023460.1 | Barley | cytosol | 3.49 | 7.69 |
| VIT_02s0025g00370.t01 | Wine grape | cytosol | 3.49 | 7.5 |
Protein Annotations
| KEGG:00900+4.6.1.12 | Gene3D:3.30.1330.50 | MapMan:50.4.5 | UniProt:A0A0R0H537 | EMBL:ACUP02007397 | EnsemblPlantsGene:GLYMA_12G139900 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008685 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016114 | InterPro:IPR036571 | EnsemblPlants:KRH25933 | ProteinID:KRH25933 |
| ProteinID:KRH25933.1 | InterPro:MECDP_synthase | InterPro:MECDP_synthase_CS | InterPro:MECDP_synthase_sf | PFAM:PF02542 | ScanProsite:PS01350 |
| PANTHER:PTHR43181 | MetaCyc:PWY-7560 | SUPFAM:SSF69765 | UniParc:UPI00023D0D7D | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr12:+:17196729..17197567
Molecular Weight (calculated)
18592.5 Da
IEP (calculated)
7.540
GRAVY (calculated)
0.198
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVPYFKPKP TSQTQILLSL RLRPVSISVS AASTPTPSSI QVDKSPVSAT PSKLLPFRIG HGFDLHRLEP GYPLIIGGIN VPHNRGCEAH SDGDVLLHCV
101: VDAILGALGL PDIGQIFPDS DPKWKGCASS VFIHEFVSNI CLPFSSLSIS HTTFGYFYCT IVDFNSIPVF NG
101: VDAILGALGL PDIGQIFPDS DPKWKGCASS VFIHEFVSNI CLPFSSLSIS HTTFGYFYCT IVDFNSIPVF NG
001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K
Arabidopsis Description
ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.