CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00370.t01	Wine grape	cytosol	30.84	87.5
HORVU0Hr1G023460.1	Barley	cytosol	26.87	78.21
CDX93899	Canola	mitochondrion	43.17	71.01
CDY08344	Canola	plastid	68.72	67.83
PGSC0003DMT400031768	Potato	plastid	66.96	67.56
AT1G63970.1	Thale cress	plastid	68.28	67.1
CDY25551	Canola	plastid	68.72	66.67
CDY34390	Canola	plastid	68.72	66.67
TraesCS6D01G239700.1	Wheat	plastid	64.32	66.67
Bra027672.1-P	Field mustard	plastid	68.28	66.52
Bra027770.1-P	Field mustard	plastid	67.84	66.09
CDY38210	Canola	plastid	67.84	66.09
GSMUA_Achr5P03350_001	Banana	plastid	66.96	66.09
TraesCS6A01G258500.1	Wheat	plastid	63.0	64.41
OQU85630	Sorghum	plastid	63.44	64.0
Zm00001d017608_P001	Maize	plastid	63.0	63.56
GSMUA_Achr4P27230_001	Banana	plastid	65.2	62.98
HORVU6Hr1G065960.1	Barley	plastid	62.56	62.01
Solyc08g081570.2.1	Tomato	plastid	67.4	59.77
KRH25933	Soybean	plastid	43.61	57.56
Os02t0680600-01	Rice	plastid	63.88	52.73
Zm00001d051458_P002	Maize	extracellular, mitochondrion	63.44	37.7

Protein Annotations

KEGG:00900+4.6.1.12	EntrezGene:100306378	Gene3D:3.30.1330.50	MapMan:9.1.2.6	EMBL:ACUP02006735	EMBL:BT090444
UniProt:C6SZ46	EnsemblPlantsGene:GLYMA_11G021400	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114
GO:GO:0016829	InterPro:IPR036571	EnsemblPlants:KRH27891	ProteinID:KRH27891	ProteinID:KRH27891.1	InterPro:MECDP_synthase
InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542	ScanProsite:PS01350	PANTHER:PTHR43181
MetaCyc:PWY-7560	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	UniParc:UPI0001B14E5D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:1516376..1518986

Molecular Weight (calculated)

24306.4 Da

IEP (calculated)

8.369

GRAVY (calculated)

-0.003

Length

227 amino acids

Sequence
(BLAST)

001: MAASSFTTSS ILFPFTTSSK SPPSQLFPSF PCKHHTLRLR PVSVSAASTP TPSIQADKSP VSATPSKLLP FRIGHGFDLH RLEPGYPLII GGINIPHDRG
101: CEAHSDGDVL LHCVVDAILG ALGLPDIGQI FPDSDPKWKG CASSVFIHES VRLMHEAGYE IGNLDATLIL QRPKLSPHKD AIKANLSALL GVDSSVVNIK
201: AKTHEKVDSL GENRSIAAHT VVLLMKK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.