Factsheet for Bra027770.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000891.1-P
Bra008559.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	Bra000891.1-P	AT4G02150.1	21798944
AT1G63970.1	Bra008559.1-P	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38210	Canola	plastid	98.71	98.71
VIT_02s0025g00370.t01	Wine grape	cytosol	30.47	88.75
HORVU0Hr1G023460.1	Barley	cytosol	28.33	84.62
Bra027672.1-P	Field mustard	plastid	81.97	81.97
AT1G63970.1	Thale cress	plastid	79.4	80.09
PGSC0003DMT400031768	Potato	plastid	66.52	68.89
TraesCS6D01G239700.1	Wheat	plastid	64.38	68.49
GSMUA_Achr5P03350_001	Banana	plastid	67.38	68.26
OQU85630	Sorghum	plastid	65.67	68.0
Zm00001d017608_P001	Maize	plastid	65.67	68.0
KRH27891	Soybean	nucleus, plastid	66.09	67.84
TraesCS6A01G258500.1	Wheat	plastid	64.38	67.57
GSMUA_Achr4P27230_001	Banana	plastid	67.38	66.81
HORVU6Hr1G065960.1	Barley	plastid	63.95	65.07
Solyc08g081570.2.1	Tomato	plastid	66.95	60.94
Os02t0680600-01	Rice	plastid	66.52	56.36
VIT_02s0025g00380.t01	Wine grape	plastid	38.2	52.98
KRH25933	Soybean	plastid	37.77	51.16
Zm00001d051458_P002	Maize	extracellular, mitochondrion	66.52	40.58

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	MapMan:9.1.2.6	EnsemblPlantsGene:Bra027770	EnsemblPlants:Bra027770.1	EnsemblPlants:Bra027770.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299
GO:GO:0008685	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016829	InterPro:IPR036571
UniProt:M4EG57	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542
ScanProsite:PS01350	PANTHER:PTHR43181	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	UniParc:UPI0002542212	SEG:seg

Description

AT1G63970 (E=6e-096) ISPF, MECPS | ISPF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Coordinates

chrA09:-:6326695..6327940

Molecular Weight (calculated)

24895.1 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.044

Length

233 amino acids

Sequence
(BLAST)

001: MAMATSTQLS SSLFHSQITK KPFLLPPAAA PNSVHGFSTR RLKSLSLSHH SSVSASAASS AVDVTEPVKK PVRTLPFRVG HGFDLHRLEP GYPLIIGGID
101: IPHDRGCGAH SDGDVLLHCV VDAILGALGL PDIGQIFPDS DPKWKGAASS VFIKEAVRLM DEAGYEIGNL DATLILQRPK ISPHKETIRS NLSKLLGADP
201: SVVNVKAKTH EKVDSLGENR SIAAHTVILL MKK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.