Factsheet for PGSC0003DMT400031768

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018802
PGSC0003DMT400076768

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	PGSC0003DMT400018802	AT4G02150.1	21798944
AT1G63970.1	PGSC0003DMT400076768	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00370.t01	Wine grape	cytosol	31.56	88.75
HORVU0Hr1G023460.1	Barley	cytosol	30.22	87.18
Solyc08g081570.2.1	Tomato	plastid	94.22	82.81
CDX93899	Canola	mitochondrion	44.44	72.46
TraesCS6D01G239700.1	Wheat	plastid	67.11	68.95
TraesCS6A01G258500.1	Wheat	plastid	68.0	68.92
GSMUA_Achr4P27230_001	Banana	plastid	71.56	68.51
Zm00001d017608_P001	Maize	plastid	68.44	68.44
OQU85630	Sorghum	plastid	68.44	68.44
GSMUA_Achr5P03350_001	Banana	plastid	69.78	68.26
AT1G63970.1	Thale cress	plastid	69.33	67.53
HORVU6Hr1G065960.1	Barley	plastid	68.44	67.25
KRH27891	Soybean	nucleus, plastid	67.56	66.96
Bra027672.1-P	Field mustard	plastid	69.33	66.95
CDY38210	Canola	plastid	69.33	66.95
CDY34390	Canola	plastid	69.33	66.67
Bra027770.1-P	Field mustard	plastid	68.89	66.52
CDY08344	Canola	plastid	67.56	66.09
CDY25551	Canola	plastid	68.44	65.81
Os02t0680600-01	Rice	plastid	68.89	56.36
VIT_02s0025g00380.t01	Wine grape	plastid	40.44	54.17
KRH25933	Soybean	plastid	39.56	51.74
Zm00001d051458_P002	Maize	extracellular, mitochondrion	69.33	40.84

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	MapMan:9.1.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987
GO:GO:0016114	GO:GO:0016829	InterPro:IPR036571	UniProt:M1AW71	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS
InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542	EnsemblPlantsGene:PGSC0003DMG400012185	PGSC:PGSC0003DMG400012185	EnsemblPlants:PGSC0003DMT400031768
ScanProsite:PS01350	PANTHER:PTHR43181	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	UniParc:UPI00029515B0	SEG:seg

Description

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400012185]

Coordinates

chr8:-:55248493..55254596

Molecular Weight (calculated)

24318.4 Da

IEP (calculated)

8.145

GRAVY (calculated)

-0.093

Length

225 amino acids

Sequence
(BLAST)

001: MASSLFFSTP IPTKLISKQK PFSYHSSNPL LPQLTHKPLR SLVVSSAAAI EAETQTSSSN SSPLKSLPFR VGHGFDLHRL EPGYPLIIGG INIPHDRGCE
101: AHSDGDVLLH CVVDAILGAL GLPDIGQIFP DTDPKWKGAP SSVFMEEAVR LMHEAGYELG NLDATLILQR PKVSPHKESI RANLCKLLGA DPSVVNLKAK
201: THEKVDSLGE NRSIAAHTVV LLMKK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.