Factsheet for Os02t0680600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0253300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	Os01t0253300-01	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G239700.1	Wheat	plastid	72.36	90.87
TraesCS6A01G258500.1	Wheat	plastid	72.36	89.64
VIT_02s0025g00370.t01	Wine grape	cytosol	25.45	87.5
HORVU6Hr1G065960.1	Barley	plastid	72.73	87.34
Zm00001d017608_P001	Maize	plastid	70.91	86.67
OQU85630	Sorghum	plastid	70.55	86.22
GSMUA_Achr5P03350_001	Banana	plastid	63.64	76.09
GSMUA_Achr4P27230_001	Banana	plastid	63.27	74.04
CDX93899	Canola	mitochondrion	36.0	71.74
PGSC0003DMT400031768	Potato	plastid	56.36	68.89
CDY08344	Canola	plastid	56.73	67.83
Bra027672.1-P	Field mustard	plastid	57.45	67.81
CDY34390	Canola	plastid	57.09	67.09
CDY38210	Canola	plastid	56.73	66.95
Bra027770.1-P	Field mustard	plastid	56.36	66.52
CDY25551	Canola	plastid	56.36	66.24
AT1G63970.1	Thale cress	plastid	54.55	64.94
KRH27891	Soybean	nucleus, plastid	52.73	63.88
Solyc08g081570.2.1	Tomato	plastid	57.09	61.33
Zm00001d051458_P002	Maize	extracellular, mitochondrion	73.82	53.14
VIT_02s0025g00380.t01	Wine grape	plastid	32.0	52.38
KRH25933	Soybean	plastid	31.64	50.58

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	EntrezGene:4330320	MapMan:9.1.2.6	UniProt:A0A0N7KFV8	ProteinID:BAS80297.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0008685
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016114
GO:GO:0016829	GO:GO:0019288	GO:GO:0046872	InterPro:IPR036571	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS
InterPro:MECDP_synthase_sf	HAMAP:MF_00107	EnsemblPlantsGene:Os02g0680600	EnsemblPlants:Os02t0680600-01	PFAM:PF02542	ScanProsite:PS01350
PANTHER:PTHR43181	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	UniParc:UPI0000DF0805	RefSeq:XP_015627624.1	SEG:seg

Description

2-C-methyl-D-erythritol 2, 4-cyclodiphosphate synthase, MECDP synthaseSimilar to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor (EC 4.6.1.12) (MECPS) (MECDP-synthase). (Os02t0680600-01)

Coordinates

chr2:-:27773497..27775510

Molecular Weight (calculated)

29279.5 Da

IEP (calculated)

10.406

GRAVY (calculated)

-0.142

Length

275 amino acids

Sequence
(BLAST)

001: MLVSPSPYRK YFGASGARKK TAGFLSIPQP KKPPNKTAKL ARSLRAISPR DDAMATASSL FLASPVATAP TARARSTPSA SPARPSLRLR RPSTLAAAAV
101: QAEHQPAVAA APKPPALPFR VGHGFDLHRL EPGLPLIIGG IDIPHDRGCD AHSDGDVLLH CVVDAILGAL GLPDIGQIFP DSDPRWKGAD SSVFMREAVK
201: LMHEAGYELG NLDATLILQK PKISPFKETI RSNLCDLLGA DPSVVNLKAK THEKVDSLGE NRSIAAHTVV LLMRK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.