Factsheet for Solyc08g081570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g009750.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	Solyc06g009750.2.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031768	Potato	plastid	82.81	94.22
VIT_02s0025g00370.t01	Wine grape	cytosol	27.73	88.75
HORVU0Hr1G023460.1	Barley	cytosol	26.56	87.18
CDX93899	Canola	mitochondrion	39.06	72.46
TraesCS6D01G239700.1	Wheat	plastid	59.77	69.86
TraesCS6A01G258500.1	Wheat	plastid	60.55	69.82
GSMUA_Achr5P03350_001	Banana	plastid	62.11	69.13
GSMUA_Achr4P27230_001	Banana	plastid	63.28	68.94
Zm00001d017608_P001	Maize	plastid	60.55	68.89
OQU85630	Sorghum	plastid	60.55	68.89
HORVU6Hr1G065960.1	Barley	plastid	60.94	68.12
AT1G63970.1	Thale cress	plastid	61.33	67.97
KRH27891	Soybean	nucleus, plastid	59.77	67.4
CDY38210	Canola	plastid	61.33	67.38
Bra027672.1-P	Field mustard	plastid	60.94	66.95
Bra027770.1-P	Field mustard	plastid	60.94	66.95
CDY34390	Canola	plastid	60.94	66.67
CDY25551	Canola	plastid	60.94	66.67
CDY08344	Canola	plastid	59.77	66.52
Os02t0680600-01	Rice	plastid	61.33	57.09
VIT_02s0025g00380.t01	Wine grape	plastid	36.72	55.95
KRH25933	Soybean	plastid	35.16	52.33
Zm00001d051458_P002	Maize	extracellular, mitochondrion	62.5	41.88

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	MapMan:9.1.2.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987
GO:GO:0016114	GO:GO:0016829	InterPro:IPR036571	UniProt:K4CPF3	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS
InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542	ScanProsite:PS01350	PANTHER:PTHR43181	SUPFAM:SSF69765
EnsemblPlantsGene:Solyc08g081570.2	EnsemblPlants:Solyc08g081570.2.1	TIGRFAMs:TIGR00151	UniParc:UPI000276C0DA	SEG:seg	:

Description

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G63970) UniProtKB/Swiss-Prot;Acc:Q9CAK8]

Coordinates

chr8:-:64585474..64590267

Molecular Weight (calculated)

27669.6 Da

IEP (calculated)

8.503

GRAVY (calculated)

0.007

Length

256 amino acids

Sequence
(BLAST)

001: MPLVFEKIGI FPSIYTSSLR FSTKLSSIPV AMASSLFFST PIPTKLISKQ KPFSHHSSNP LLPQSTIKPL RSLVVSSAAA IEAETETSSS NSTPLKSLPF
101: RVGHGFDLHR LEPGYPLIIG GINIPHDRGC EAHSDGDVLL HCVVDAILGA LGLPDIGQIF PDTDPKWKGA PSSVFMEEAV RLMHEAGYEL GNLDATLILQ
201: RPKVSPHKES IRANLCKLLG ADPSVVNLKA KTHEKVDSLG ENRSIAAHTV VLLMKK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.