Factsheet for VIT_02s0025g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g01100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	VIT_07s0005g01100.t01	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031768	Potato	plastid	54.17	40.44
OQU85630	Sorghum	plastid	52.38	39.11
AT1G63970.1	Thale cress	plastid	53.57	38.96
TraesCS6D01G239700.1	Wheat	plastid	50.6	38.81
GSMUA_Achr4P27230_001	Banana	plastid	54.17	38.72
TraesCS6A01G258500.1	Wheat	plastid	50.6	38.29
GSMUA_Achr5P03350_001	Banana	plastid	52.38	38.26
Zm00001d017608_P001	Maize	plastid	51.19	38.22
CDY38210	Canola	plastid	52.98	38.2
Bra027770.1-P	Field mustard	plastid	52.98	38.2
Bra027672.1-P	Field mustard	plastid	52.98	38.2
CDY08344	Canola	plastid	51.79	37.83
CDY34390	Canola	plastid	52.38	37.61
HORVU6Hr1G065960.1	Barley	plastid	51.19	37.55
CDY25551	Canola	plastid	51.79	37.18
Solyc08g081570.2.1	Tomato	plastid	55.95	36.72
Os02t0680600-01	Rice	plastid	52.38	32.0
CDX93899	Canola	mitochondrion	25.0	30.43
Zm00001d051458_P002	Maize	extracellular, mitochondrion	51.79	22.77
VIT_02s0025g00370.t01	Wine grape	cytosol	1.79	3.75
HORVU0Hr1G023460.1	Barley	cytosol	1.19	2.56

Protein Annotations

KEGG:00900+4.6.1.12	EntrezGene:100250076	wikigene:100250076	Gene3D:3.30.1330.50	MapMan:50.4.5	ProteinID:CCB58199
ProteinID:CCB58199.1	UniProt:F6HUN3	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114
InterPro:IPR036571	EntrezGene:LOC100250076	wikigene:LOC100250076	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf
PFAM:PF02542	ScanProsite:PS01350	PANTHER:PTHR43181	SUPFAM:SSF69765	UniParc:UPI00021085DC	ArrayExpress:VIT_02s0025g00380
EnsemblPlantsGene:VIT_02s0025g00380	EnsemblPlants:VIT_02s0025g00380.t01	RefSeq:XP_002278406	RefSeq:XP_002278406.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:486537..487336

Molecular Weight (calculated)

17971.6 Da

IEP (calculated)

7.323

GRAVY (calculated)

-0.008

Length

168 amino acids

Sequence
(BLAST)

001: MAMAAPIHAS SITKISSTKQ IYPFTSHYRP SSLVLSHTLS LRSTLRRPMV AAAATTAVEA EPRSNSTAPS KSLPFRVGHG FDLHRLEPGY PLIIGGIDIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAPSSVF IKEALLLFAH NTPAQTET

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.