Factsheet for Zm00001d017608_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008345_P003
Zm00001d040274_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	Zm00001d008345_P003	AT4G02150.1	21798944
AT1G63970.1	Zm00001d040274_P001	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00370.t01	Wine grape	cytosol	31.11	87.5
TraesCS6A01G258500.1	Wheat	plastid	84.89	86.04
TraesCS6D01G239700.1	Wheat	plastid	83.56	85.84
HORVU6Hr1G065960.1	Barley	plastid	84.0	82.53
GSMUA_Achr5P03350_001	Banana	plastid	76.44	74.78
GSMUA_Achr4P27230_001	Banana	plastid	74.22	71.06
Os02t0680600-01	Rice	plastid	86.67	70.91
CDX93899	Canola	mitochondrion	43.11	70.29
PGSC0003DMT400031768	Potato	plastid	68.44	68.44
CDY08344	Canola	plastid	68.44	66.96
CDY38210	Canola	plastid	68.89	66.52
Bra027672.1-P	Field mustard	plastid	68.44	66.09
Bra027770.1-P	Field mustard	plastid	68.0	65.67
CDY34390	Canola	plastid	68.0	65.38
AT1G63970.1	Thale cress	plastid	66.67	64.94
CDY25551	Canola	plastid	66.67	64.1
KRH27891	Soybean	nucleus, plastid	63.56	63.0
Solyc08g081570.2.1	Tomato	plastid	68.89	60.55
Zm00001d051458_P002	Maize	extracellular, mitochondrion	90.22	53.14
VIT_02s0025g00380.t01	Wine grape	plastid	38.22	51.19
KRH25933	Soybean	plastid	38.67	50.58

Protein Annotations

KEGG:00900+4.6.1.12	EntrezGene:100276918	Gene3D:3.30.1330.50	MapMan:9.1.2.6	ProteinID:AQK73539.1	UniProt:B6TL41
EMBL:EU965706	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0016829
InterPro:IPR036571	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf	HAMAP:MF_00107	PFAM:PF02542
ScanProsite:PS01350	PANTHER:PTHR43181	SUPFAM:SSF69765	TIGRFAMs:TIGR00151	UniParc:UPI000182E440	EnsemblPlantsGene:Zm00001d017608
EnsemblPlants:Zm00001d017608_P001	EnsemblPlants:Zm00001d017608_T001	SEG:seg	:	:	:

Description

methyl erythritol cyclodiphosphate synthase2 methyl erythritol cyclodiphosphate synthase2

Coordinates

chr5:-:201460778..201462840

Molecular Weight (calculated)

23964.0 Da

IEP (calculated)

7.646

GRAVY (calculated)

-0.053

Length

225 amino acids

Sequence
(BLAST)

001: MATAPYASSL FLASSPISTA PRIRAGPCPP SAQPSLRLRP RPSPAAAAAV QAEHQPALTA APKPPALPFR VGHGFDLHRL EPDLPLIIGG INIPHDRGCE
101: AHSDGDVLLH CVVDAILGAL GLPDIGQIFP DSDPRWKGAD SSVFMREAVK LMHEAGYELG NLDATLILQK PKISPFKETI RSNLCDLLGA DPSVVNLKAK
201: THEKVDSLGE NRSIAAHTVV LLMRK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.