CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90948
CDX97257
CDY01921
CDY64806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63970.1	CDX90948	AT4G02150.1	21798944
AT1G63970.1	CDX97257	AT4G02150.1	21798944
AT1G63970.1	CDY01921	AT4G02150.1	21798944
AT1G63970.1	CDY64806	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38210	Canola	plastid	95.22	93.99
VIT_02s0025g00370.t01	Wine grape	cytosol	30.87	88.75
CDY25551	Canola	plastid	89.13	87.61
HORVU0Hr1G023460.1	Barley	cytosol	28.7	84.62
CDY34390	Canola	plastid	84.78	83.33
AT1G63970.1	Thale cress	plastid	79.57	79.22
CDX93899	Canola	mitochondrion	46.09	76.81
OQU85630	Sorghum	plastid	67.39	68.89
KRH27891	Soybean	nucleus, plastid	67.83	68.72
Zm00001d017608_P001	Maize	plastid	66.96	68.44
TraesCS6D01G239700.1	Wheat	plastid	64.78	68.04
TraesCS6A01G258500.1	Wheat	plastid	65.22	67.57
PGSC0003DMT400031768	Potato	plastid	66.09	67.56
GSMUA_Achr5P03350_001	Banana	plastid	66.96	66.96
GSMUA_Achr4P27230_001	Banana	plastid	67.83	66.38
HORVU6Hr1G065960.1	Barley	plastid	64.78	65.07
Solyc08g081570.2.1	Tomato	plastid	66.52	59.77
Os02t0680600-01	Rice	plastid	67.83	56.73
VIT_02s0025g00380.t01	Wine grape	plastid	37.83	51.79
KRH25933	Soybean	plastid	37.39	50.0
Zm00001d051458_P002	Maize	extracellular, mitochondrion	67.83	40.84

Protein Annotations

KEGG:00900+4.6.1.12	Gene3D:3.30.1330.50	MapMan:9.1.2.6	GO:A0A078F5L5	UniProt:A0A078F5L5	EnsemblPlants:CDY08344
ProteinID:CDY08344	ProteinID:CDY08344.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0008685	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114
GO:GO:0016829	EnsemblPlantsGene:GSBRNA2T00000049001	InterPro:IPR036571	InterPro:MECDP_synthase	InterPro:MECDP_synthase_CS	InterPro:MECDP_synthase_sf
HAMAP:MF_00107	PFAM:PF02542	ScanProsite:PS01350	PANTHER:PTHR43181	MetaCyc:PWY-7560	SUPFAM:SSF69765
TIGRFAMs:TIGR00151	UniPathway:UPA00056	UniParc:UPI0004EB10FC	SEG:seg	:	:

Description

BnaC09g12520D2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Source:UniProtKB/TrEMBL;Acc:A0A078F5L5]

Coordinates

chrLK031985:-:351177..353002

Molecular Weight (calculated)

24642.9 Da

IEP (calculated)

9.172

GRAVY (calculated)

0.005

Length

230 amino acids

Sequence
(BLAST)

001: MAMATSTQLS SSLFHSQITK KPFLLPPAAA PISVHGFSTR RPKSLSFSSV SASAASSAVD VTEPVKKSVR TLPFRVGHGF DLHRLERGYP LIIGGIDIPH
101: DRGCEAHSDG DVLLHCVVDA ILGALGLPDI GQIFPDSDPK WKGAASSVFI KEAVRLMDEA GYEIGNLDAT LILQRPKISP HKETILSNLS KLLGADPSVV
201: NLKAKTHEKV DSLGENRSIA AHTVILLMKK

Best Arabidopsis Sequence Match ( AT1G63970.1 )
(BLAST)

001: MATSSTQLLL SSSSLFHSQI TKKPFLLPAT KIGVWRPKKS LSLSCRPSAS VSAASSAVDV NESVTSEKPT KTLPFRIGHG FDLHRLEPGY PLIIGGIVIP
101: HDRGCEAHSD GDVLLHCVVD AILGALGLPD IGQIFPDSDP KWKGAASSVF IKEAVRLMDE AGYEIGNLDA TLILQRPKIS PHKETIRSNL SKLLGADPSV
201: VNLKAKTHEK VDSLGENRSI AAHTVILLMK K

Arabidopsis Description

ISPF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAK8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.