CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68463
CDX70811
CDX70900
CDX74768
CDX75834
CDX76844
CDX77799
CDX79139
CDX82428
CDX82925
CDX88867
CDX89554
CDX90556
CDX92658
CDY03412
CDY06318
CDY06428
CDY06646
CDY09730
CDY10205
CDY11039
CDY17703
CDY18898
CDY20135
CDY21845
CDY27356
CDY27533
CDY32901
CDY34317
CDY34804
CDY37068
CDY37307
CDY38933
CDY40150
CDY42320
CDY44955
CDY51233
CDY52493
CDY53983
CDY60454
CDY66886
CDY70544
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02150.1	CDY06646	AT1G06510.1	21798944
AT4G02150.1	CDY10205	AT1G06510.1	21798944
AT4G02150.1	CDY40150	AT1G52560.1	21798944
AT4G02150.1	CDY66886	AT1G52560.1	21798944
AT4G02150.1	CDX89554	AT2G23290.1	21798944
AT4G02150.1	CDY38933	AT2G23290.1	21798944
AT4G02150.1	CDX76844	AT2G24020.1	21798944
AT4G02150.1	CDY34804	AT2G24020.1	21798944
AT4G02150.1	CDX74768	AT2G45820.1	21798944
AT4G02150.1	CDY06318	AT2G45820.1	21798944
AT4G02150.1	CDY18898	AT2G45820.1	21798944
AT4G02150.1	CDY27356	AT2G45820.1	21798944
AT4G02150.1	CDY37068	AT2G45820.1	21798944
AT4G02150.1	CDX75834	AT3G15540.1	21798944
AT4G02150.1	CDX82428	AT3G15540.1	21798944
AT4G02150.1	CDY20135	AT3G15540.1	21798944
AT4G02150.1	CDY21845	AT3G15540.1	21798944
AT4G02150.1	CDY71748	AT3G15540.1	21798944
AT4G02150.1	CDY06428	AT3G21215.1	21798944
AT4G02150.1	CDY27533	AT3G21215.1	21798944
AT4G02150.1	CDY37307	AT3G21215.1	21798944
AT4G02150.1	CDX68463	AT3G48550.1	21798944
AT4G02150.1	CDY60454	AT3G48550.1	21798944
AT4G02150.1	CDY70544	AT3G48550.1	21798944
AT4G02150.1	CDX90556	AT4G15900.1	9765207
AT4G02150.1	CDY09730	AT4G15900.1	9765207
AT4G02150.1	CDX79139	AT4G22240.1	21798944
AT4G02150.1	CDX82925	AT4G22240.1	21798944
AT4G02150.1	CDX70811	AT4G24840.1	21798944
AT4G02150.1	CDX92658	AT4G24840.1	21798944
AT4G02150.1	CDY03412	AT4G24840.1	21798944
AT4G02150.1	CDY11039	AT4G24840.1	21798944
AT4G02150.1	CDY34317	AT4G24840.1	21798944
AT4G02150.1	CDY51233	AT4G24840.1	21798944
AT4G02150.1	CDX70900	AT5G19960.1	21798944
AT4G02150.1	CDX88867	AT5G19960.1	21798944
AT4G02150.1	CDY42320	AT5G19960.1	21798944
AT4G02150.1	CDY44955	AT5G19960.1	21798944
AT4G02150.1	CDX77799	AT5G47810.1	21798944
AT4G02150.1	CDY17703	AT5G47810.1	21798944
AT4G02150.1	CDY32901	AT5G57120.1	21798944
AT4G02150.1	CDY52493	AT5G57120.1	21798944
AT4G02150.1	CDY53983	AT5G57120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97257	Canola	cytosol	98.31	98.31
AT4G02150.1	Thale cress	cytosol	84.18	84.18
CDY64806	Canola	cytosol	78.72	80.69
CDX90948	Canola	cytosol	77.97	79.92
VIT_07s0005g01100.t01	Wine grape	cytosol	73.45	73.72
Solyc06g009750.2.1	Tomato	nucleus	71.75	72.3
PGSC0003DMT400018802	Potato	cytosol	71.75	72.3
CDY52043	Canola	cytosol	71.19	70.79
CDY22779	Canola	cytosol	71.19	70.79
Os01t0253300-01	Rice	cytosol	70.06	70.72
TraesCS3A01G172000.1	Wheat	golgi, nucleus	69.68	70.61
TraesCS3D01G178500.1	Wheat	cytosol	69.68	70.61
CDY34430	Canola	cytosol	70.24	70.38
KXG32187	Sorghum	cytosol	69.87	70.27
Zm00001d008345_P003	Maize	cytosol	70.06	70.19
Zm00001d040274_P001	Maize	cytosol	69.87	70.13
CDY32215	Canola	cytosol	69.87	70.0
HORVU3Hr1G034750.5	Barley	cytosol	69.68	69.42
CDY09716	Canola	cytosol	69.87	69.35
CDX89948	Canola	cytosol	67.98	69.29
CDX90544	Canola	cytosol	69.68	68.52
TraesCS3B01G202800.2	Wheat	cytosol	67.61	66.85
CDX94988	Canola	cytosol	64.97	63.89
CDY31102	Canola	plasma membrane	64.97	63.65
CDX93514	Canola	cytosol	64.97	63.65
CDY32165	Canola	cytosol	64.6	63.28
CDY33917	Canola	cytosol	58.76	58.65
CDY05638	Canola	cytosol	58.76	58.54
CDY05194	Canola	cytosol	53.11	52.51
CDY27746	Canola	cytosol	52.92	51.84
CDY15260	Canola	cytosol	69.11	47.35
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.44	45.3
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	6.4	38.2
CDY55698	Canola	cytosol, plastid	26.93	27.5
CDY04878	Canola	plastid	26.93	27.45
CDY10407	Canola	cytosol	24.67	26.52
CDX70330	Canola	cytosol, extracellular	12.62	25.67

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078EL95	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	EnsemblPlants:CDY01921	ProteinID:CDY01921	ProteinID:CDY01921.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565
GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00113137001	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975
InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF53	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0004EE369B	SEG:seg	:	:	:

Description

BnaC02g28060D

Coordinates

chrLK031930:+:165600..168342

Molecular Weight (calculated)

58364.6 Da

IEP (calculated)

4.895

GRAVY (calculated)

-0.223

Length

531 amino acids

Sequence
(BLAST)

001: MSLRPSAKTE VRRNRYKVAV DAEEGRRRRE DHMVEIRKNK REENLQKKRR EGISAAPQSG QVDLPSAKKL IENLPEMVSG IWSEDANLQL ETTTLLRKLL
101: SLEQNPPIND VVGSGVVPRV VTFLSRDDFP KLQFEAAWAL TNIASGTSEN TNVIIQSGAI PVFIHLLTSP NEEVREQAVW ALGNVAGDSP KCRDLVLSLG
201: AMLPLLSQFT EQTKLSMLRN ATWTLSNFCR GKPQPSFEQT SPALPVLKRL VQSADEEVLT DACWALSYLS DSSNDKIQAV IDAGVIPRLI DLLAHSAPAV
301: LIPALRTIGN IVTGDDIQTQ TVLDHQVLPR LLHLLTNPYK KSIKKEACWT ISNITAGCSQ QIQGVIEAGI IQSLVGVLHN AEFEVKKEAA WGISNATSGG
401: THDQIKFLVS QGCIKPLCDL LTCPDPRILT VCLEALENIL VVGEALKSLG HTGEDNPYAS MIDEAEGLEK IENLQSHDNN DIYQKAVKIL ETFWTEDDDE
501: EGCNDENHAP QAGFQFGSAN VAAPPGQFNF M

Best Arabidopsis Sequence Match ( AT4G02150.1 )
(BLAST)

001: MSLRPSAKTE VRRNRYKVAV DAEEGRRRRE DNLVEIRKNK REENLQKKRF TSSMAFGSAT GQTEQDLSSA NQLKDNLPAM VAGIWSEDSN SQLEATNLLR
101: KLLSIEQNPP INEVVQSGVV PRVVKFLSRD DFPKLQFEAA WALTNIASGT SENTNVIIES GAVPIFIQLL SSASEDVREQ AVWALGNVAG DSPKCRDLVL
201: SYGAMTPLLS QFNENTKLSM LRNATWTLSN FCRGKPPPAF EQTQPALPVL ERLVQSMDEE VLTDACWALS YLSDNSNDKI QAVIEAGVVP RLIQLLGHSS
301: PSVLIPALRT IGNIVTGDDL QTQMVLDQQA LPCLLNLLKN NYKKSIKKEA CWTISNITAG NADQIQAVID AGIIQSLVWV LQSAEFEVKK EAAWGISNAT
401: SGGTHDQIKF MVSQGCIKPL CDLLTCPDLK VVTVCLEALE NILVVGEAEK NLGHTGEDNL YAQMIDEAEG LEKIENLQSH DNNDIYDKAV KILETFWTED
501: NEEEGNDENH APQSGFQFGS TNVPPGQFNF I

Arabidopsis Description

IMPA3Importin subunit alpha-3 [Source:UniProtKB/Swiss-Prot;Acc:O04294]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.