Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G48550.1 | CDX70076 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | CDX78884 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | CDX81016 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | CDX98948 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | CDY55775 | AT5G06710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60454 | Canola | nucleus | 94.51 | 94.51 |
| CDY70544 | Canola | nucleus | 81.71 | 85.35 |
| AT3G48550.1 | Thale cress | nucleus | 79.88 | 82.91 |
| KRH57236 | Soybean | cytosol | 51.22 | 54.9 |
| KRH03966 | Soybean | cytosol | 51.22 | 54.55 |
| VIT_17s0000g01360.t01 | Wine grape | cytosol, mitochondrion, nucleus | 53.66 | 52.07 |
| GSMUA_Achr6P20920_001 | Banana | cytosol, mitochondrion, nucleus | 42.68 | 46.98 |
| PGSC0003DMT400046599 | Potato | nucleus | 48.17 | 46.75 |
| Solyc03g112920.1.1 | Tomato | nucleus | 48.78 | 45.45 |
| GSMUA_Achr6P06410_001 | Banana | nucleus | 39.63 | 43.92 |
| Zm00001d016564_P001 | Maize | cytosol | 41.46 | 40.24 |
| EES05120 | Sorghum | cytosol | 41.46 | 37.99 |
| Os04t0386300-01 | Rice | cytosol, mitochondrion, plastid | 29.88 | 36.3 |
| TraesCS2A01G282700.1 | Wheat | cytosol | 39.02 | 35.56 |
| EES12026 | Sorghum | cytosol, plastid, vacuole | 39.63 | 32.83 |
| TraesCS2B01G300000.1 | Wheat | cytosol | 35.37 | 32.22 |
| Zm00001d003978_P001 | Maize | cytosol | 35.98 | 31.55 |
| TraesCS2D01G281400.1 | Wheat | cytosol | 32.93 | 29.67 |
Protein Annotations
| EnsemblPlants:CDX68463 | EnsemblPlantsGene:GSBRNA2T00125920001 | ncoils:Coil | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF2 | ProteinID:CDX68463 |
| ProteinID:CDX68463.1 | SEG:seg | UniParc:UPI0004EB1021 | MapMan:35.2 | : | : |
Description
BnaC01g25410D
Coordinates
chrLK031788:-:1916057..1916617
Molecular Weight (calculated)
18834.5 Da
IEP (calculated)
8.516
GRAVY (calculated)
-0.778
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQQQQQDH HKELQLLPSP PSTESRVRKF RPTVITTDHH HSPSMIHQDL DLKLSISLST IPTATVEHLS DGGGGGSGVE ALKWHAAEQI RLAAIEKAYA
101: ERVRELTRRE MEMAQAEFAR ARVMRQKARE EVERAERMKE RSMTKIDTTC LEITCYSCRQ RFKP
101: ERVRELTRRE MEMAQAEFAR ARVMRQKARE EVERAERMKE RSMTKIDTTC LEITCYSCRQ RFKP
001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
Arabidopsis Description
At3g48550 [Source:UniProtKB/TrEMBL;Acc:Q9SMP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.