Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400016146 | |
| PGSC0003DMT400060951 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G48550.1 | PGSC0003DMT400016146 | AT5G06710.1 | 21798944 |
| AT3G48550.1 | PGSC0003DMT400060951 | AT5G06710.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g112920.1.1 | Tomato | nucleus | 89.35 | 85.8 |
| KRH57236 | Soybean | cytosol | 53.85 | 59.48 |
| KRH03966 | Soybean | cytosol | 53.85 | 59.09 |
| VIT_17s0000g01360.t01 | Wine grape | cytosol, mitochondrion, nucleus | 57.4 | 57.4 |
| CDY70544 | Canola | nucleus | 50.3 | 54.14 |
| Bra018049.1-P | Field mustard | nucleus | 50.89 | 53.42 |
| AT3G48550.1 | Thale cress | nucleus | 49.7 | 53.16 |
| CDY60454 | Canola | nucleus | 50.3 | 51.83 |
| Bra029904.1-P | Field mustard | nucleus | 50.3 | 51.83 |
| GSMUA_Achr6P20920_001 | Banana | cytosol, mitochondrion, nucleus | 43.79 | 49.66 |
| CDX68463 | Canola | cytosol, mitochondrion, nucleus | 46.75 | 48.17 |
| GSMUA_Achr6P06410_001 | Banana | nucleus | 40.83 | 46.62 |
| Os04t0386300-01 | Rice | cytosol, mitochondrion, plastid | 33.14 | 41.48 |
| Zm00001d016564_P001 | Maize | cytosol | 40.83 | 40.83 |
| EES05120 | Sorghum | cytosol | 41.42 | 39.11 |
| TraesCS2A01G282700.1 | Wheat | cytosol | 39.05 | 36.67 |
| Zm00001d003978_P001 | Maize | cytosol | 39.65 | 35.83 |
| TraesCS2B01G300000.1 | Wheat | cytosol | 37.28 | 35.0 |
| EES12026 | Sorghum | cytosol, plastid, vacuole | 40.24 | 34.34 |
| TraesCS2D01G281400.1 | Wheat | cytosol | 33.73 | 31.32 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400046599 | EnsemblPlantsGene:PGSC0003DMG400018091 | EntrezGene:102587359 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009606 |
| GO:GO:0009628 | GO:GO:0009630 | ncoils:Coil | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF2 | PGSC:PGSC0003DMG400018091 |
| RefSeq:XP_006344397.1 | SEG:seg | UniParc:UPI0002948167 | UniProt:M1BJB4 | MapMan:35.2 | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018091]
Coordinates
chr3:-:52718309..52721055
Molecular Weight (calculated)
19652.1 Da
IEP (calculated)
7.256
GRAVY (calculated)
-0.886
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDHQRELHF LSTHQNAANS SSWPSDSSGN MESIEPPSLD LQLSISVRRP IKPPSHHNQG ILIRPAINHD HYTTDLRFDS GYVEALKWQA AEQIRLAAIE
101: KAYAERVREL TRREIEMAQS EFARARSMWE RAKEEVERAE KLKERATRRI DPTCMEVTCQ SCSQKFRPH
101: KAYAERVREL TRREIEMAQS EFARARSMWE RAKEEVERAE KLKERATRRI DPTCMEVTCQ SCSQKFRPH
001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
Arabidopsis Description
At3g48550 [Source:UniProtKB/TrEMBL;Acc:Q9SMP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.