Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57236 | Soybean | cytosol | 94.16 | 94.77 |
| VIT_17s0000g01360.t01 | Wine grape | cytosol, mitochondrion, nucleus | 63.64 | 57.99 |
| AT3G48550.1 | Thale cress | nucleus | 57.79 | 56.33 |
| CDY70544 | Canola | nucleus | 57.14 | 56.05 |
| Bra018049.1-P | Field mustard | nucleus | 57.79 | 55.28 |
| PGSC0003DMT400046599 | Potato | nucleus | 59.09 | 53.85 |
| CDY60454 | Canola | nucleus | 57.14 | 53.66 |
| Bra029904.1-P | Field mustard | nucleus | 57.14 | 53.66 |
| Solyc03g112920.1.1 | Tomato | nucleus | 59.09 | 51.7 |
| CDX68463 | Canola | cytosol, mitochondrion, nucleus | 54.55 | 51.22 |
| GSMUA_Achr6P20920_001 | Banana | cytosol, mitochondrion, nucleus | 48.7 | 50.34 |
| GSMUA_Achr6P06410_001 | Banana | nucleus | 44.81 | 46.62 |
| Os04t0386300-01 | Rice | cytosol, mitochondrion, plastid | 38.31 | 43.7 |
| Zm00001d016564_P001 | Maize | cytosol | 44.16 | 40.24 |
| TraesCS2A01G282700.1 | Wheat | cytosol | 44.16 | 37.78 |
| EES05120 | Sorghum | cytosol | 43.51 | 37.43 |
| TraesCS2B01G300000.1 | Wheat | cytosol | 43.51 | 37.22 |
| Zm00001d003978_P001 | Maize | cytosol | 42.86 | 35.29 |
| TraesCS2D01G281400.1 | Wheat | cytosol | 40.26 | 34.07 |
| EES12026 | Sorghum | cytosol, plastid, vacuole | 43.51 | 33.84 |
Protein Annotations
| EMBL:ACUP02010370 | EnsemblPlants:KRH03966 | EnsemblPlantsGene:GLYMA_17G130400 | EntrezGene:100819947 | GO:GO:0008150 | GO:GO:0009605 |
| GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | ncoils:Coil | PANTHER:PTHR34946 | PANTHER:PTHR34946:SF2 |
| ProteinID:KRH03966 | ProteinID:KRH03966.1 | SEG:seg | UniParc:UPI0001CA9B9D | UniProt:I1MUQ4 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr17:+:10446318..10447159
Molecular Weight (calculated)
17278.6 Da
IEP (calculated)
7.099
GRAVY (calculated)
-0.599
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDEINRELD LLPSSRSESS LLRLRSAVSS SSTTDCGGGG GGGATPSLDL QLSISVRPPA AVLMCDGVDA LKWQAAEQIR LAAMEKAYAE RVRELTRREM
101: EMAQSEFARA RQMWERAREE VERAERIKER ATRKVDSTCM EITCHSCRQR FRPA
101: EMAQSEFARA RQMWERAREE VERAERIKER ATRKVDSTCM EITCHSCRQR FRPA
001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
Arabidopsis Description
At3g48550 [Source:UniProtKB/TrEMBL;Acc:Q9SMP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.