CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01102
KRH04366
KRH12426
KRH28314
KRH40151
KRH48783
KRH58171
KRH66562
KRH77172

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	KRH01102	AT3G60390.1	21798944
AT5G06710.1	KRH40151	AT3G60390.1	21798944
AT5G06710.1	KRH48783	AT3G60390.1	21798944
AT5G06710.1	KRH66562	AT3G60390.1	21798944
AT5G06710.1	KRH12426	AT4G26100.1	21798944
AT5G06710.1	KRH04366	AT4G37790.1	21798944
AT5G06710.1	KRH28314	AT4G37790.1	21798944
AT5G06710.1	KRH58171	AT4G37790.1	21798944
AT5G06710.1	KRH77172	AT4G37790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0447000-00	Rice	nucleus	21.88	93.33
KRH43419	Soybean	nucleus	90.62	92.31
GSMUA_Achr3P07740_001	Banana	nucleus	30.21	59.79
KRG95402	Soybean	nucleus, plastid	45.05	59.25
KRH67080	Soybean	nucleus	44.27	59.03
VIT_13s0156g00260.t01	Wine grape	nucleus	53.91	57.82
KRH38083	Soybean	nucleus	48.96	57.49
KRH71831	Soybean	plastid	48.7	56.84
Solyc01g073910.2.1	Tomato	nucleus	51.04	53.7
PGSC0003DMT400016146	Potato	nucleus	51.56	53.08
KRH40151	Soybean	nucleus	30.73	51.53
Zm00001d020670_P001	Maize	nucleus	43.75	50.45
GSMUA_Achr7P02380_001	Banana	nucleus	37.76	50.35
KRH77331	Soybean	nucleus	34.9	50.0
GSMUA_Achr9P15710_001	Banana	nucleus	39.58	48.72
TraesCS5D01G235300.1	Wheat	nucleus	42.97	48.67
Zm00001d005875_P001	Maize	nucleus	40.62	48.0
EER98990	Sorghum	nucleus	45.57	47.43
KRH28155	Soybean	nucleus	35.16	47.37
AT5G06710.1	Thale cress	nucleus	41.41	47.32
KRH57467	Soybean	nucleus	36.72	47.32
CDX81016	Canola	nucleus	32.03	47.31
CDX98948	Canola	nucleus	41.67	47.2
CDX70076	Canola	nucleus	41.67	47.06
Bra009219.1-P	Field mustard	nucleus	41.67	47.06
KRH04179	Soybean	nucleus	35.94	46.15
KRH28314	Soybean	nucleus	33.85	45.94
TraesCS5B01G231300.1	Wheat	nucleus	42.45	45.92
TraesCS5A01G232700.1	Wheat	nucleus	41.93	45.87
KRH77172	Soybean	nucleus	33.59	45.58
KRH50371	Soybean	nucleus	25.26	45.54
Bra005907.1-P	Field mustard	nucleus	38.02	45.34
KRH12370	Soybean	nucleus	26.56	45.13
CDY55775	Canola	nucleus	37.76	45.03
KRH48783	Soybean	nucleus	36.46	44.16
KRH37372	Soybean	nucleus	27.08	43.88
KRH66562	Soybean	nucleus	35.42	43.87
KRG89300	Soybean	nucleus	25.0	43.84
KRH01102	Soybean	nucleus	33.07	43.79
GSMUA_Achr8P22800_001	Banana	nucleus	30.21	43.77
KRH19131	Soybean	nucleus	23.96	43.19
KRH02731	Soybean	nucleus	23.44	43.06
KXG25294	Sorghum	nucleus	42.71	42.93
HORVU5Hr1G067010.2	Barley	nucleus	42.45	41.48
KRH04366	Soybean	nucleus	33.33	41.03
KRH58171	Soybean	extracellular, nucleus	32.29	40.66
CDX78884	Canola	nucleus	26.56	40.48
Zm00001d031745_P001	Maize	plastid	42.97	37.25
KRH15480	Soybean	nucleus	28.65	36.07
KRH61469	Soybean	nucleus	27.08	35.86
KRG88660	Soybean	nucleus	28.39	35.28

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100778742	MapMan:15.5.3.1	EMBL:ACUP02009794	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G269100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	UniProt:I1MJJ6	InterPro:IPR001356	EnsemblPlants:KRH13873	ProteinID:KRH13873	ProteinID:KRH13873.1
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF105	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000233BFDA	SEG:seg

Description

hypothetical protein

Coordinates

chr15:+:50591888..50594469

Molecular Weight (calculated)

42522.9 Da

IEP (calculated)

5.804

GRAVY (calculated)

-0.938

Length

384 amino acids

Sequence
(BLAST)

001: MELGLSLGDS SRPLLGFMEK PREASNQLGL GFNTTLSIGP IITTHKDHQQ DEDEEYQEEE EEETKPKNNN THRIQGPDGL SSNPNNNNNT VLHQLDLLPQ
101: LALPWHPPSE NGSLSSELGG SSRGLDVNAQ PPAVEDEAEE AAALSSSPNS AASSFQMDLC IYSSRGGSSY KRDFEGEAYD QRTSSRASDD DDNNNGSGGN
201: TRKKLRLSKE QSAFLEESFK EHNTLNPKQK LALAKQLNLQ PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LHKELQELRA LKTSNPFYMQ
301: LPATTLTMCP SCERVATNST STSLSISATI NATNSGAMAS VKTSNNNNNN DSPSKAIGFP FGKPRFHPFV HTSQQPHQHQ STAS

Best Arabidopsis Sequence Match ( AT2G44910.1 )
(BLAST)

001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR

Arabidopsis Description

ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.