CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69330
CDX71814
CDX77762
CDX82685
CDX94377
CDY25971
CDY41046
CDY41168
CDY60301
CDY64220
CDY64679
CDY67919
CDY69293

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06710.1	CDX71814	AT3G60390.1	21798944
AT5G06710.1	CDY41168	AT3G60390.1	21798944
AT5G06710.1	CDX82685	AT4G26100.1	21798944
AT5G06710.1	CDX94377	AT4G26100.1	21798944
AT5G06710.1	CDY69293	AT4G26100.1	21798944
AT5G06710.1	CDX69330	AT4G37790.1	21798944
AT5G06710.1	CDY60301	AT4G37790.1	21798944
AT5G06710.1	CDY64220	AT4G37790.1	21798944
AT5G06710.1	CDY67919	AT4G37790.1	21798944
AT5G06710.1	CDX77762	AT5G47370.1	21798944
AT5G06710.1	CDY25971	AT5G47370.1	21798944
AT5G06710.1	CDY41046	AT5G47370.1	21798944
AT5G06710.1	CDY64679	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0447000-00	Rice	nucleus	30.38	87.78
Bra005907.1-P	Field mustard	nucleus	99.23	80.12
CDY55775	Canola	nucleus	95.77	77.33
CDX98948	Canola	nucleus	87.31	66.96
CDX70076	Canola	nucleus	87.31	66.76
AT5G06710.1	Thale cress	nucleus	83.08	64.29
CDX78884	Canola	nucleus	55.0	56.75
GSMUA_Achr3P07740_001	Banana	nucleus	40.0	53.61
CDY41046	Canola	nucleus	38.46	52.91
CDY25971	Canola	nucleus	43.08	44.8
CDY40379	Canola	nucleus	32.69	43.37
CDX77824	Canola	nucleus	33.08	43.0
CDY63827	Canola	nucleus	32.31	42.86
KRH67080	Soybean	nucleus	47.31	42.71
CDX77762	Canola	nucleus	44.62	42.34
CDY64679	Canola	nucleus	44.62	42.03
CDY17676	Canola	nucleus	31.54	41.62
KRG95402	Soybean	nucleus, plastid	45.77	40.75
CDX71814	Canola	nucleus	44.62	40.7
CDX74693	Canola	nucleus	46.15	40.68
CDY70444	Canola	nucleus	42.69	40.36
CDY67061	Canola	nucleus	42.69	40.36
GSMUA_Achr7P02380_001	Banana	nucleus	44.62	40.28
CDY09626	Canola	nucleus	43.46	40.21
CDX90473	Canola	nucleus	43.08	40.14
CDY64220	Canola	nucleus	36.92	39.83
CDX69330	Canola	nucleus	43.08	39.72
CDY41168	Canola	nucleus	45.0	39.66
GSMUA_Achr8P22800_001	Banana	nucleus	40.38	39.62
CDY67919	Canola	nucleus	42.31	39.01
VIT_08s0007g06670.t01	Wine grape	nucleus	49.62	38.97
KRH38083	Soybean	nucleus	48.85	38.84
KRH71831	Soybean	plastid	48.85	38.6
CDX72758	Canola	nucleus	30.77	38.28
CDX96287	Canola	nucleus	26.54	38.12
CDY60301	Canola	nucleus	39.23	37.78
CDY03710	Canola	nucleus	29.62	37.56
GSMUA_Achr9P15710_001	Banana	nucleus	45.0	37.5
VIT_13s0156g00260.t01	Wine grape	nucleus	51.54	37.43
CDY41083	Canola	nucleus	18.46	37.21
Zm00001d020670_P001	Maize	nucleus	47.31	36.94
CDY37015	Canola	nucleus	45.38	36.76
CDY27404	Canola	nucleus	45.0	36.68
Zm00001d005875_P001	Maize	nucleus	44.62	35.69
PGSC0003DMT400060951	Potato	nucleus	47.69	35.33
Solyc10g080540.1.1	Tomato	nucleus	48.08	35.31
Solyc01g073910.2.1	Tomato	nucleus	48.46	34.52
TraesCS5D01G235300.1	Wheat	nucleus	45.0	34.51
PGSC0003DMT400016146	Potato	nucleus	48.85	34.05
TraesCS5B01G231300.1	Wheat	nucleus	46.15	33.8
TraesCS5A01G232700.1	Wheat	nucleus	45.38	33.62
EER98990	Sorghum	nucleus	47.69	33.6
KRH43419	Soybean	nucleus	48.08	33.16
KRH13873	Soybean	nucleus	47.31	32.03
KXG25294	Sorghum	nucleus	45.38	30.89
HORVU5Hr1G067010.2	Barley	nucleus	44.62	29.52
Zm00001d031745_P001	Maize	plastid	45.38	26.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078CV73	EnsemblPlants:CDX81016	ProteinID:CDX81016	ProteinID:CDX81016.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00134448001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:Leu_zip_homeo	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF514	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0004EDB2EA	SEG:seg

Description

BnaC03g02700D

Coordinates

chrLK031823:-:1285728..1287751

Molecular Weight (calculated)

29355.8 Da

IEP (calculated)

10.019

GRAVY (calculated)

-0.795

Length

260 amino acids

Sequence
(BLAST)

001: MGLDVLGFGS QRSLSSSSSP SVEDEKKYKS KLTQRANYSD GVRVSSSVDP SLQLQLHLPW IPENRAPTVA EPSMPVSPPD SVTSSFRLDF GIKSYGYEKR
101: NNKRDMEDEK KKLRLSKDQS AFLEDSFKEH NTLNPKQKIA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKKCCE SLTDENRRLQ KEVKELRALK
201: TSSPFYMQRP ATTLTMCPSC ERVATSSSQP STSAAHIDLS TSSFHSPLIP VKPGPAKQVS

Best Arabidopsis Sequence Match ( AT5G06710.1 )
(BLAST)

001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS

Arabidopsis Description

HAT14Homeobox-leucine zipper protein HAT14 [Source:UniProtKB/Swiss-Prot;Acc:P46665]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.