Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67061 | Canola | nucleus | 98.55 | 98.55 |
| AT4G17460.1 | Thale cress | nucleus | 90.55 | 88.3 |
| CDX90473 | Canola | nucleus | 88.0 | 86.74 |
| CDY09626 | Canola | nucleus | 88.36 | 86.48 |
| CDY25971 | Canola | nucleus | 66.91 | 73.6 |
| CDX77762 | Canola | nucleus | 72.36 | 72.63 |
| CDY64679 | Canola | nucleus | 72.73 | 72.46 |
| CDY41046 | Canola | nucleus | 47.64 | 69.31 |
| VIT_15s0021g01880.t01 | Wine grape | nucleus | 54.91 | 52.98 |
| CDX71814 | Canola | nucleus | 53.45 | 51.58 |
| CDY41168 | Canola | nucleus | 53.45 | 49.83 |
| CDX74693 | Canola | nucleus | 51.27 | 47.8 |
| CDY40379 | Canola | nucleus | 32.73 | 45.92 |
| CDY37015 | Canola | nucleus | 53.45 | 45.79 |
| CDY27404 | Canola | nucleus | 52.36 | 45.14 |
| CDY63827 | Canola | nucleus | 32.0 | 44.9 |
| CDY17676 | Canola | nucleus | 32.0 | 44.67 |
| CDX77824 | Canola | nucleus | 32.36 | 44.5 |
| CDY03710 | Canola | nucleus | 32.0 | 42.93 |
| CDX81016 | Canola | nucleus | 40.36 | 42.69 |
| CDY41083 | Canola | nucleus | 20.0 | 42.64 |
| CDY64220 | Canola | nucleus | 36.0 | 41.08 |
| CDX72758 | Canola | nucleus | 30.18 | 39.71 |
| CDY67919 | Canola | nucleus | 39.64 | 38.65 |
| CDY60301 | Canola | nucleus | 37.82 | 38.52 |
| CDX69330 | Canola | nucleus | 39.27 | 38.3 |
| CDX70076 | Canola | nucleus | 47.27 | 38.24 |
| CDX96287 | Canola | nucleus | 25.09 | 38.12 |
| CDX98948 | Canola | nucleus | 46.91 | 38.05 |
| CDY55775 | Canola | nucleus | 44.36 | 37.89 |
| CDX78884 | Canola | nucleus | 29.45 | 32.14 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078JUH9 | UniProt:A0A078JUH9 | EnsemblPlants:CDY70444 | ProteinID:CDY70444 |
| ProteinID:CDY70444.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00003439001 | InterPro:HD-ZIP_N | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | PRINTS:PR00031 |
| ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EDEBEC | SEG:seg | : | : | : |
Description
BnaCnng68370DBnaCnng68370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUH9]
Coordinates
chrLK042143:+:768..2048
Molecular Weight (calculated)
30867.5 Da
IEP (calculated)
8.994
GRAVY (calculated)
-0.838
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMGKDDLGL SLSLGFAQNQ HPLHLNLKPT SSPMSNHQMF PWNQTFVSSS NHQNHQSLRK IDVNSFPSTV ELEEETGVSS PNSTISSTVS GKRRSERQGS
101: GDDLDIALDR SSSRGTSDEE EEYGGEACRK KLRLSKDQSA VLEDTFKEHN TLNPKQKLAL AKKLGLTARQ VEVWFQNRRA RTKLKQTEVD CEYLKRCVEK
201: LTEENRRLEK EAAELRALKL SPGLYGKMSP PTTLLMCPSC ERVGGPSNHS QRSVSLNPWL QMGHGSTFDV KHPRS
101: GDDLDIALDR SSSRGTSDEE EEYGGEACRK KLRLSKDQSA VLEDTFKEHN TLNPKQKLAL AKKLGLTARQ VEVWFQNRRA RTKLKQTEVD CEYLKRCVEK
201: LTEENRRLEK EAAELRALKL SPGLYGKMSP PTTLLMCPSC ERVGGPSNHS QRSVSLNPWL QMGHGSTFDV KHPRS
001: MMMGKEDLGL SLSLGFAQNH PLQLNLKPTS SPMSNLQMFP WNQTLVSSSD QQKQQFLRKI DVNSLPTTVD LEEETGVSSP NSTISSTVSG KRRSTEREGT
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS
Arabidopsis Description
HAT1Homeobox-leucine zipper protein HAT1 [Source:UniProtKB/Swiss-Prot;Acc:P46600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.