Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010612.1-P | Field mustard | nucleus | 97.1 | 86.67 |
| CDY60301 | Canola | nucleus | 96.68 | 86.3 |
| AT4G37790.1 | Thale cress | nucleus | 87.14 | 75.54 |
| CDY67919 | Canola | nucleus | 86.31 | 73.76 |
| CDX69330 | Canola | nucleus | 85.89 | 73.4 |
| PGSC0003DMT400055199 | Potato | nucleus | 57.68 | 52.26 |
| Solyc02g091930.2.1 | Tomato | nucleus | 57.68 | 51.87 |
| PGSC0003DMT400026968 | Potato | nucleus | 52.7 | 50.0 |
| KRH28314 | Soybean | nucleus | 58.09 | 49.47 |
| Solyc02g063520.2.1 | Tomato | nucleus | 51.04 | 48.81 |
| VIT_00s0732g00010.t01 | Wine grape | nucleus | 56.85 | 48.41 |
| KRH77172 | Soybean | nucleus | 56.43 | 48.06 |
| CDY41046 | Canola | nucleus | 34.02 | 43.39 |
| KRH04366 | Soybean | nucleus | 56.02 | 43.27 |
| KRH58171 | Soybean | extracellular, nucleus | 53.94 | 42.62 |
| CDY25971 | Canola | nucleus | 40.66 | 39.2 |
| CDY64679 | Canola | nucleus | 44.4 | 38.77 |
| CDX77762 | Canola | nucleus | 43.98 | 38.69 |
| CDX81016 | Canola | nucleus | 39.83 | 36.92 |
| CDY09626 | Canola | nucleus | 42.32 | 36.3 |
| CDX90473 | Canola | nucleus | 41.91 | 36.2 |
| CDX71814 | Canola | nucleus | 42.74 | 36.14 |
| CDY70444 | Canola | nucleus | 41.08 | 36.0 |
| CDY67061 | Canola | nucleus | 41.08 | 36.0 |
| CDY41083 | Canola | nucleus | 19.09 | 35.66 |
| CDY40379 | Canola | nucleus | 28.63 | 35.2 |
| CDY63827 | Canola | nucleus | 28.63 | 35.2 |
| CDY03710 | Canola | nucleus | 29.88 | 35.12 |
| CDX77824 | Canola | nucleus | 29.05 | 35.0 |
| CDY41168 | Canola | nucleus | 42.74 | 34.92 |
| CDY17676 | Canola | nucleus | 28.22 | 34.52 |
| CDX72758 | Canola | nucleus | 29.88 | 34.45 |
| CDX74693 | Canola | nucleus | 41.91 | 34.24 |
| CDY55775 | Canola | nucleus | 43.98 | 32.92 |
| CDY27404 | Canola | nucleus | 43.15 | 32.6 |
| CDY37015 | Canola | nucleus | 42.74 | 32.09 |
| CDX98948 | Canola | nucleus | 43.57 | 30.97 |
| CDX96287 | Canola | nucleus | 23.24 | 30.94 |
| CDX70076 | Canola | nucleus | 43.15 | 30.59 |
| CDX78884 | Canola | nucleus | 28.63 | 27.38 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078JG62 | UniProt:A0A078JG62 | EnsemblPlants:CDY64220 | ProteinID:CDY64220 |
| ProteinID:CDY64220.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00041004001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo |
| InterPro:MIP_CS | PFAM:PF00046 | PFAM:PF02183 | ScanProsite:PS00027 | ScanProsite:PS00221 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF327 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEBE25 |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng19250DBnaAnng19250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JG62]
Coordinates
chrLK034422:+:28921..30204
Molecular Weight (calculated)
27192.3 Da
IEP (calculated)
8.483
GRAVY (calculated)
-0.690
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLDDSCNTG LVLGLGLSPT HNSYNYAIKK SSATVDHHVN PSLTLSLSGE SYKVEKTVSG AGDQIYRQTS SHSGISSFSS GRIKREREVC GDGEEEAEET
101: EKRVVCSRVR DDHEDEEGVS ARKKLRLTKQ QSIVLEENFK MHSTLNPKQK QALARQLSLR PRQVEVWFQN RRARTKLKQT EMDCEFLKKC CETLTDENRR
201: LQKELQDLKA LKMSQPFYMH IPPATLIGAF SIPFINPSAA C
101: EKRVVCSRVR DDHEDEEGVS ARKKLRLTKQ QSIVLEENFK MHSTLNPKQK QALARQLSLR PRQVEVWFQN RRARTKLKQT EMDCEFLKKC CETLTDENRR
201: LQKELQDLKA LKMSQPFYMH IPPATLIGAF SIPFINPSAA C
001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC
Arabidopsis Description
HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.