CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69330
CDX91612
CDX93236
CDX93238
CDY04768
CDY07031
CDY07638
CDY21400
CDY25761
CDY27099
CDY60301
CDY61778
CDY64220
CDY67919

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47370.1	CDY04768	AT1G22920.1	21798944
AT5G47370.1	CDY21400	AT1G22920.1	21798944
AT5G47370.1	CDY25761	AT1G22920.1	21798944
AT5G47370.1	CDX93236	AT2G39760.1	21798944
AT5G47370.1	CDX93238	AT2G39760.1	21798944
AT5G47370.1	CDY07031	AT2G39760.1	21798944
AT5G47370.1	CDY07638	AT2G39760.1	21798944
AT5G47370.1	CDY61778	AT2G39760.1	21798944
AT5G47370.1	CDX69330	AT4G37790.1	21798944
AT5G47370.1	CDY60301	AT4G37790.1	21798944
AT5G47370.1	CDY64220	AT4G37790.1	21798944
AT5G47370.1	CDY67919	AT4G37790.1	21798944
AT5G47370.1	CDX91612	AT5G51910.1	21798944
AT5G47370.1	CDY27099	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25971	Canola	nucleus	83.07	62.8
Bra017489.1-P	Field mustard	nucleus	86.24	60.37
CDY64679	Canola	nucleus	83.07	56.88
CDX77762	Canola	nucleus	82.01	56.57
AT5G47370.1	Thale cress	nucleus	83.07	55.48
CDY67061	Canola	nucleus	69.84	48.0
CDX90473	Canola	nucleus	70.37	47.67
CDY70444	Canola	nucleus	69.31	47.64
CDY09626	Canola	nucleus	70.37	47.33
VIT_15s0021g01880.t01	Wine grape	nucleus	62.43	41.4
CDX81016	Canola	nucleus	52.91	38.46
CDX71814	Canola	nucleus	56.08	37.19
CDY40379	Canola	nucleus	37.57	36.22
CDY41168	Canola	nucleus	56.08	35.93
CDY63827	Canola	nucleus	37.04	35.71
CDY17676	Canola	nucleus	37.04	35.53
CDX77824	Canola	nucleus	37.57	35.5
CDX74693	Canola	nucleus	53.44	34.24
CDY64220	Canola	nucleus	43.39	34.02
CDY03710	Canola	nucleus	36.51	33.66
CDX72758	Canola	nucleus	36.51	33.01
CDY37015	Canola	nucleus	55.56	32.71
CDY60301	Canola	nucleus	46.03	32.22
CDY27404	Canola	nucleus	53.97	31.97
CDX69330	Canola	nucleus	47.62	31.91
CDY67919	Canola	nucleus	47.62	31.91
CDY55775	Canola	nucleus	53.97	31.68
CDX96287	Canola	nucleus	29.63	30.94
CDX98948	Canola	nucleus	55.03	30.68
CDX70076	Canola	nucleus	55.03	30.59
CDY41083	Canola	nucleus	20.63	30.23
CDX78884	Canola	nucleus	28.04	21.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	GO:A0A078HTN7	UniProt:A0A078HTN7	EnsemblPlants:CDY41046	ProteinID:CDY41046
ProteinID:CDY41046.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00072357001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0004EEA48B	:	:

Description

BnaA09g18250DBnaA09g18250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTN7]

Coordinates

chrLK032489:-:48697..51851

Molecular Weight (calculated)

21608.2 Da

IEP (calculated)

10.753

GRAVY (calculated)

-0.621

Length

189 amino acids

Sequence
(BLAST)

001: MELPGASSFL GRIAANLKLL SRIWLLGWNG GGETSRKKLR LSKDQSAFLE DTFKEHNTLN PKQKVALAKK LNMTARQVEV WFQNRRARTK LKQTEVDCEY
101: LKRCVEKLTE ENRRLQKEAM ELRTLKLSPQ FYGQMTPPTT LIMCPSCERV AGPSSNHHQT HRPVAINPWV ARAGQVAHGL DFEALRPRS

Best Arabidopsis Sequence Match ( AT2G44910.1 )
(BLAST)

001: MGERDDGLGL SLSLGNSQQK EPSLRLNLMP LTTSSSSSSF QHMHNQNNNS HPQKIHNISW THLFQSSGIK RTTAERNSDA GSFLRGFNVN RAQSSVAVVD
101: LEEEAAVVSS PNSAVSSLSG NKRDLAVARG GDENEAERAS CSRGGGSGGS DDEDGGNGDG SRKKLRLSKD QALVLEETFK EHSTLNPKQK LALAKQLNLR
201: ARQVEVWFQN RRARTKLKQT EVDCEYLKRC CDNLTEENRR LQKEVSELRA LKLSPHLYMH MTPPTTLTMC PSCERVSSSA ATVTAAPSTT TTPTVVGRPS
301: PQRLTPWTAI SLQQKSGR

Arabidopsis Description

ATHB-4Uncharacterized protein At2g44910 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV86]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.