Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012663.1-P | Field mustard | nucleus | 99.28 | 97.19 |
| CDY09626 | Canola | nucleus | 93.91 | 93.24 |
| AT4G17460.1 | Thale cress | nucleus | 91.04 | 90.07 |
| CDY67061 | Canola | nucleus | 87.81 | 89.09 |
| CDY70444 | Canola | nucleus | 86.74 | 88.0 |
| CDY25971 | Canola | nucleus | 65.59 | 73.2 |
| CDY64679 | Canola | nucleus | 72.04 | 72.83 |
| CDX77762 | Canola | nucleus | 70.97 | 72.26 |
| CDY41046 | Canola | nucleus | 47.67 | 70.37 |
| VIT_15s0021g01880.t01 | Wine grape | nucleus | 52.33 | 51.23 |
| CDX71814 | Canola | nucleus | 51.25 | 50.18 |
| CDY41168 | Canola | nucleus | 51.25 | 48.47 |
| CDX74693 | Canola | nucleus | 48.39 | 45.76 |
| CDY37015 | Canola | nucleus | 51.97 | 45.17 |
| CDY40379 | Canola | nucleus | 31.54 | 44.9 |
| CDY27404 | Canola | nucleus | 50.9 | 44.51 |
| CDY63827 | Canola | nucleus | 30.82 | 43.88 |
| CDY17676 | Canola | nucleus | 30.82 | 43.65 |
| CDX77824 | Canola | nucleus | 31.18 | 43.5 |
| CDX81016 | Canola | nucleus | 40.14 | 43.08 |
| CDY41083 | Canola | nucleus | 19.71 | 42.64 |
| CDY64220 | Canola | nucleus | 36.2 | 41.91 |
| CDY03710 | Canola | nucleus | 30.11 | 40.98 |
| CDY67919 | Canola | nucleus | 40.5 | 40.07 |
| CDX69330 | Canola | nucleus | 39.78 | 39.36 |
| CDY60301 | Canola | nucleus | 37.63 | 38.89 |
| CDX72758 | Canola | nucleus | 29.03 | 38.76 |
| CDX98948 | Canola | nucleus | 46.24 | 38.05 |
| CDX70076 | Canola | nucleus | 46.24 | 37.94 |
| CDY55775 | Canola | nucleus | 43.73 | 37.89 |
| CDX96287 | Canola | nucleus | 24.01 | 37.02 |
| CDX78884 | Canola | nucleus | 28.67 | 31.75 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078DTD8 | EnsemblPlants:CDX90473 | ProteinID:CDX90473 | ProteinID:CDX90473.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00151088001 |
| InterPro:HD-ZIP_N | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI0004EEA2EE | SEG:seg | : | : | : | : |
Description
BnaA03g43080D
Coordinates
chrLK031863:-:424608..425714
Molecular Weight (calculated)
31327.1 Da
IEP (calculated)
8.238
GRAVY (calculated)
-0.738
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMGKEDLSL SLSLGFAQTH HPHKLMNLKP TSSPISNLQM FPWNQTFVSS SDHQSQQLFT KINVNSLPVD LEEETGVSSL NSTISSNVSG KRRSEREGTS
101: GGAGDDLDVT LDRSSSRGTS EEEEEEYGGE ACRKKLRLSK DQSAVLEDTF KEHNTLNPKQ KLALAKKLGL TARQVEVWFQ NRRARTKLKQ TEVDCEYLKR
201: CVEKLTEENR RLEKEAAELR ALKLSPRLYG HMSPPTTLLM CPSCERVAGP SNHNQRSVSL SPWLQMAHGS TFDVVHPRS
101: GGAGDDLDVT LDRSSSRGTS EEEEEEYGGE ACRKKLRLSK DQSAVLEDTF KEHNTLNPKQ KLALAKKLGL TARQVEVWFQ NRRARTKLKQ TEVDCEYLKR
201: CVEKLTEENR RLEKEAAELR ALKLSPRLYG HMSPPTTLLM CPSCERVAGP SNHNQRSVSL SPWLQMAHGS TFDVVHPRS
001: MMMGKEDLGL SLSLGFAQNH PLQLNLKPTS SPMSNLQMFP WNQTLVSSSD QQKQQFLRKI DVNSLPTTVD LEEETGVSSP NSTISSTVSG KRRSTEREGT
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS
101: SGGGCGDDLD ITLDRSSSRG TSDEEEDYGG ETCRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF QNRRARTKLK QTEVDCEYLK
201: RCVEKLTEEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL MCPSCERVAG PSSSNHNQRS VSLSPWLQMA HGSTFDVMRP RS
Arabidopsis Description
HAT1Homeobox-leucine zipper protein HAT1 [Source:UniProtKB/Swiss-Prot;Acc:P46600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.