Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024948.1-P | Field mustard | nucleus | 98.91 | 98.91 |
| CDX77762 | Canola | nucleus | 96.74 | 97.45 |
| CDY25971 | Canola | nucleus | 80.8 | 89.2 |
| AT5G47370.1 | Thale cress | nucleus | 90.94 | 88.69 |
| CDY41046 | Canola | nucleus | 56.88 | 83.07 |
| CDY67061 | Canola | nucleus | 73.91 | 74.18 |
| CDY09626 | Canola | nucleus | 74.64 | 73.31 |
| CDY70444 | Canola | nucleus | 72.46 | 72.73 |
| CDX90473 | Canola | nucleus | 72.83 | 72.04 |
| VIT_15s0021g01880.t01 | Wine grape | nucleus | 56.16 | 54.39 |
| CDX71814 | Canola | nucleus | 53.62 | 51.93 |
| CDY41168 | Canola | nucleus | 53.62 | 50.17 |
| CDX74693 | Canola | nucleus | 50.36 | 47.12 |
| CDY27404 | Canola | nucleus | 53.26 | 46.08 |
| CDY37015 | Canola | nucleus | 53.26 | 45.79 |
| CDX81016 | Canola | nucleus | 42.03 | 44.62 |
| CDY64220 | Canola | nucleus | 38.77 | 44.4 |
| CDY40379 | Canola | nucleus | 31.52 | 44.39 |
| CDY63827 | Canola | nucleus | 30.8 | 43.37 |
| CDY17676 | Canola | nucleus | 30.8 | 43.15 |
| CDX77824 | Canola | nucleus | 31.16 | 43.0 |
| CDY03710 | Canola | nucleus | 30.8 | 41.46 |
| CDY60301 | Canola | nucleus | 40.22 | 41.11 |
| CDY41083 | Canola | nucleus | 19.2 | 41.09 |
| CDY67919 | Canola | nucleus | 41.3 | 40.43 |
| CDX69330 | Canola | nucleus | 40.94 | 40.07 |
| CDX72758 | Canola | nucleus | 29.71 | 39.23 |
| CDY55775 | Canola | nucleus | 45.65 | 39.13 |
| CDX70076 | Canola | nucleus | 47.46 | 38.53 |
| CDX98948 | Canola | nucleus | 47.1 | 38.35 |
| CDX96287 | Canola | nucleus | 24.64 | 37.57 |
| CDX78884 | Canola | nucleus | 28.62 | 31.35 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078JDG0 | UniProt:A0A078JDG0 | EnsemblPlants:CDY64679 | ProteinID:CDY64679 |
| ProteinID:CDY64679.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00042542001 | InterPro:HD-ZIP_N | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PFAM:PF04618 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 | SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EE4DA1 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g40090DBnaA06g40090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDG0]
Coordinates
chrLK034521:+:1558..3008
Molecular Weight (calculated)
31061.6 Da
IEP (calculated)
7.856
GRAVY (calculated)
-0.820
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMRKEDLGL SLSLGLSQDH TPLQLIQNPN SSISNNLQRF PWNQTFASTS DLGKIDVNSL PTTVDCEEEP GVSSPNSTIS STISGGKRSE REGISEHDDI
101: TPDRGYSRGT SDEEEDGGET SRKKLRLSKD QSAFLEETFK EHNTLNPKQK LALAKKLNLT ARQVEVWFQN RRARTKLKQT EVDCEYLKRC VEKLTEENRR
201: LQKEAMELRT LKLSPQFYGQ MTPPTTLIMC PSCERVAGPS SNHQHNHRPV PVNPWVACAA GQVAHGLNFE ALRPRS
101: TPDRGYSRGT SDEEEDGGET SRKKLRLSKD QSAFLEETFK EHNTLNPKQK LALAKKLNLT ARQVEVWFQN RRARTKLKQT EVDCEYLKRC VEKLTEENRR
201: LQKEAMELRT LKLSPQFYGQ MTPPTTLIMC PSCERVAGPS SNHQHNHRPV PVNPWVACAA GQVAHGLNFE ALRPRS
001: MMMGKEDLGL SLSLGFSQNH NPLQMNLNPN SSLSNNLQRL PWNQTFDPTS DLRKIDVNSF PSTVNCEEDT GVSSPNSTIS STISGKRSER EGISGTGVGS
101: GDDHDEITPD RGYSRGTSDE EEDGGETSRK KLRLSKDQSA FLEETFKEHN TLNPKQKLAL AKKLNLTARQ VEVWFQNRRA RTKLKQTEVD CEYLKRCVEK
201: LTEENRRLQK EAMELRTLKL SPQFYGQMTP PTTLIMCPSC ERVGGPSSSN HHHNHRPVSI NPWVACAGQV AHGLNFEALR PRS
101: GDDHDEITPD RGYSRGTSDE EEDGGETSRK KLRLSKDQSA FLEETFKEHN TLNPKQKLAL AKKLNLTARQ VEVWFQNRRA RTKLKQTEVD CEYLKRCVEK
201: LTEENRRLQK EAMELRTLKL SPQFYGQMTP PTTLIMCPSC ERVGGPSSSN HHHNHRPVSI NPWVACAGQV AHGLNFEALR PRS
Arabidopsis Description
HAT2Homeobox-leucine zipper protein HAT2 [Source:UniProtKB/Swiss-Prot;Acc:P46601]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.