Factsheet for Bra024948.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000147.1-P
Bra010612.1-P
Bra011786.1-P
Bra012351.1-P
Bra017053.1-P
Bra017853.1-P
Bra022568.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47370.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G47370.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G47370.1	Bra000147.1-P	AT2G39760.1	21798944
AT5G47370.1	Bra017053.1-P	AT2G39760.1	21798944
AT5G47370.1	Bra010612.1-P	AT4G37790.1	21798944
AT5G47370.1	Bra011786.1-P	AT4G37790.1	21798944
AT5G47370.1	Bra017853.1-P	AT4G37790.1	21798944
AT5G47370.1	Bra022568.1-P	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64679	Canola	nucleus	98.91	98.91
CDX77762	Canola	nucleus	97.1	97.81
Bra017489.1-P	Field mustard	nucleus	89.13	91.11
AT5G47370.1	Thale cress	nucleus	90.94	88.69
Bra026255.1-P	Field mustard	nucleus	73.19	73.72
Bra012663.1-P	Field mustard	nucleus	72.46	70.18
VIT_15s0021g01880.t01	Wine grape	nucleus	56.16	54.39
Bra040094.1-P	Field mustard	nucleus	56.16	54.39
Bra026666.1-P	Field mustard	nucleus	27.9	49.36
Bra007530.1-P	Field mustard	nucleus	53.62	47.59
Bra004874.1-P	Field mustard	nucleus	50.36	47.12
Bra017451.1-P	Field mustard	nucleus	26.81	46.25
Bra040335.1-P	Field mustard	nucleus	53.26	45.79
Bra024888.1-P	Field mustard	nucleus	30.43	42.64
Bra010612.1-P	Field mustard	nucleus	40.58	41.48
Bra007952.1-P	Field mustard	nucleus	30.8	41.46
Bra017853.1-P	Field mustard	nucleus	41.3	40.57
Bra030200.1-P	Field mustard	nucleus	41.3	40.57
Bra011786.1-P	Field mustard	nucleus	41.3	40.43
Bra016174.1-P	Field mustard	nucleus	29.71	39.23
Bra009219.1-P	Field mustard	nucleus	47.46	38.53
Bra005907.1-P	Field mustard	nucleus	44.93	38.51

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra024948	EnsemblPlants:Bra024948.1	EnsemblPlants:Bra024948.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4E842	PFAM:PF00046
PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF514
SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000253FA95	SEG:seg	:

Description

AT5G47370 (E=1e-106) HAT2 | HAT2; DNA binding / transcription factor/ transcription repressor

Coordinates

chrA06:+:24351692..24352811

Molecular Weight (calculated)

31058.6 Da

IEP (calculated)

7.869

GRAVY (calculated)

-0.837

Length

276 amino acids

Sequence
(BLAST)

001: MMMRKEDLGL SLSLGLSQDH TPLQLSQNPN SSISNNLHRF PWNQTFASTS DLGKIDVNSL PTTVDCEEEP GVSSPNSTIS STISGGKRSE REGISEHDDI
101: TPDRGYSRGT SDEEEDGGET SRKKLRLSKD QSAFLEETFK EHNTLNPKQK LALAKKLNLT ARQVEVWFQN RRARTKLKQT EVDCEYLKRC VEKLTEENRR
201: LQKEAMELRT LKLSPQFYGQ MTPPTTLIMC PSCERVAGPS SNHQHNHRPV PINPWVACAA GQVAHGLNFE ALRPRS

Best Arabidopsis Sequence Match ( AT5G47370.1 )
(BLAST)

001: MMMGKEDLGL SLSLGFSQNH NPLQMNLNPN SSLSNNLQRL PWNQTFDPTS DLRKIDVNSF PSTVNCEEDT GVSSPNSTIS STISGKRSER EGISGTGVGS
101: GDDHDEITPD RGYSRGTSDE EEDGGETSRK KLRLSKDQSA FLEETFKEHN TLNPKQKLAL AKKLNLTARQ VEVWFQNRRA RTKLKQTEVD CEYLKRCVEK
201: LTEENRRLQK EAMELRTLKL SPQFYGQMTP PTTLIMCPSC ERVGGPSSSN HHHNHRPVSI NPWVACAGQV AHGLNFEALR PRS

Arabidopsis Description

HAT2Homeobox-leucine zipper protein HAT2 [Source:UniProtKB/Swiss-Prot;Acc:P46601]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.