Factsheet for Bra024888.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17676	Canola	nucleus	98.48	98.48
Bra026666.1-P	Field mustard	nucleus	68.53	86.54
Bra017451.1-P	Field mustard	nucleus	64.97	80.0
KRH50371	Soybean	nucleus	68.53	63.38
KRG89300	Soybean	nucleus	68.53	61.64
GSMUA_Achr4P06480_001	Banana	nucleus	50.25	59.64
VIT_01s0011g04870.t01	Wine grape	nucleus	67.01	58.67
Solyc05g008050.1.1	Tomato	nucleus	61.42	57.89
GSMUA_AchrUn_...	Banana	nucleus	60.91	55.05
PGSC0003DMT400078329	Potato	nucleus	59.9	54.88
TraesCS3B01G260800.1	Wheat	nucleus	59.9	53.15
TraesCS3A01G231600.1	Wheat	nucleus	59.9	53.15
Zm00001d044081_P001	Maize	nucleus	60.41	52.89
TraesCS3D01G221800.1	Wheat	nucleus	59.39	52.7
GSMUA_Achr4P13440_001	Banana	nucleus	60.41	52.42
Os01t0643600-00	Rice	nucleus	60.41	51.97
EES03343	Sorghum	nucleus	59.39	50.87
Bra007952.1-P	Field mustard	nucleus	50.76	48.78
Bra016174.1-P	Field mustard	nucleus	51.27	48.33
Bra026255.1-P	Field mustard	nucleus	44.16	31.75
Bra017489.1-P	Field mustard	nucleus	42.64	31.11
Bra024948.1-P	Field mustard	nucleus	42.64	30.43
Bra004874.1-P	Field mustard	nucleus	44.67	29.83
Bra040094.1-P	Field mustard	nucleus	43.15	29.82
Bra012663.1-P	Field mustard	nucleus	43.15	29.82
Bra007530.1-P	Field mustard	nucleus	45.69	28.94
Bra030200.1-P	Field mustard	nucleus	40.1	28.11
Bra017853.1-P	Field mustard	nucleus	40.1	28.11
Bra040335.1-P	Field mustard	nucleus	45.69	28.04
Bra010612.1-P	Field mustard	nucleus	37.56	27.41
Bra005907.1-P	Field mustard	nucleus	44.67	27.33
Bra011786.1-P	Field mustard	nucleus	39.09	27.3
Bra009219.1-P	Field mustard	nucleus	45.69	26.47

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EnsemblPlantsGene:Bra024888	EnsemblPlants:Bra024888.1	EnsemblPlants:Bra024888.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M4E7Y2	PFAM:PF00046	PFAM:PF02183	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI000253F9AA	SEG:seg	:	:	:	:

Description

AT2G01430 (E=6e-078) ATHB17, ATHB-17 | ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17); transcription factor

Coordinates

chrA06:+:24120420..24123378

Molecular Weight (calculated)

22264.3 Da

IEP (calculated)

8.121

GRAVY (calculated)

-0.866

Length

197 amino acids

Sequence
(BLAST)

001: MAILPENSSH LDLTISVPGF SSSPPSDEGS GGGREQLKLD MNQLPSSSED DEELSHGGSA PPRKKLRLTR EQSRLLEDSF RQNHTLNPKQ KEALAKHLML
101: RPRQIEVWFQ NRRARSKLKQ TEIECEYFKR WFGSLTEQNH RLHREVEELR AMNVGPPTVT SASSLSMCPR CERITTAASP SLAIPSQKTL PPQESEH

Best Arabidopsis Sequence Match ( AT2G01430.1 )
(BLAST)

001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR

Arabidopsis Description

ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.