CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00097
OQU84499

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70920.1	EES00097	AT5G25160.1	21245844
AT1G70920.1	OQU84499	AT5G25160.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044081_P001	Maize	nucleus	93.04	95.11
Os01t0643600-00	Rice	nucleus	86.96	87.34
TraesCS3A01G231600.1	Wheat	nucleus	81.74	84.68
TraesCS3B01G260800.1	Wheat	nucleus	81.74	84.68
TraesCS3D01G221800.1	Wheat	nucleus	81.74	84.68
GSMUA_AchrUn_...	Banana	nucleus	71.74	75.69
GSMUA_Achr4P06480_001	Banana	nucleus	53.91	74.7
GSMUA_Achr4P13440_001	Banana	nucleus	70.43	71.37
Bra026666.1-P	Field mustard	nucleus	43.91	64.74
KRH50371	Soybean	nucleus	56.96	61.5
VIT_01s0011g04870.t01	Wine grape	nucleus	60.0	61.33
KRG89300	Soybean	nucleus	56.96	59.82
CDY63827	Canola	nucleus	50.87	59.69
CDY40379	Canola	nucleus	50.87	59.69
Bra024888.1-P	Field mustard	nucleus	50.87	59.39
Bra017451.1-P	Field mustard	nucleus	41.3	59.38
CDX77824	Canola	nucleus	51.3	59.0
Solyc05g008050.1.1	Tomato	nucleus	53.48	58.85
CDY17676	Canola	nucleus	50.0	58.38
PGSC0003DMT400078329	Potato	nucleus	53.91	57.67
AT1G70920.1	Thale cress	nucleus	46.52	51.94
CDY03710	Canola	nucleus	45.65	51.22
Bra007952.1-P	Field mustard	nucleus	45.65	51.22
CDY41083	Canola	nucleus	28.7	51.16
Bra016174.1-P	Field mustard	nucleus	45.22	49.76
CDX72758	Canola	nucleus	44.35	48.8
CDX96287	Canola	nucleus	37.83	48.07
AT2G01430.1	Thale cress	plasma membrane	51.74	43.27
EER91838	Sorghum	nucleus	42.61	38.58
EES12613	Sorghum	nucleus	38.26	37.77
EER92607	Sorghum	nucleus	43.91	33.78
EER87812	Sorghum	nucleus	39.13	31.58
EER90307	Sorghum	nucleus	29.13	28.39
EER87813	Sorghum	plastid	39.13	28.3
EER98990	Sorghum	nucleus	43.48	27.1
EER94486	Sorghum	nucleus	38.7	25.72
KXG25294	Sorghum	nucleus	42.17	25.39
OQU85171	Sorghum	nucleus	35.65	25.39
EES04526	Sorghum	nucleus	24.78	22.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8058227	UniProt:C5XF45	ncoils:Coil	EnsemblPlants:EES03343
ProteinID:EES03343	ProteinID:EES03343.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046
PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340
SMART:SM00389	EnsemblPlantsGene:SORBI_3003G235900	SUPFAM:SSF46689	UniParc:UPI0001A850ED	RefSeq:XP_002458223.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:57452999..57457769

Molecular Weight (calculated)

25257.8 Da

IEP (calculated)

9.467

GRAVY (calculated)

-0.866

Length

230 amino acids

Sequence
(BLAST)

001: MGSTSPSGLE LTMAVPGLSS SSGSEGFGCN NNGNGNGNNM RDLDMNQPAS GGEEEEFPMG SVEEEEDERG GAGGRGPHRS KKLRLSKEQS RLLEESFRFN
101: HTPTPKQKEA LAGKLQLRPR QVEVWFQNRR ARTKLKQTEL ECEYLKRCFG SLTEENRRLQ REVEELRAMR VAPPTVLSPH SRQPLPASAL TMCPRCERIT
201: AATAARTPRP AAAAAAGSNP FHPRRPSAAF

Best Arabidopsis Sequence Match ( AT2G01430.1 )
(BLAST)

001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR

Arabidopsis Description

ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.