Factsheet for PGSC0003DMT400078329

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008050.1.1	Tomato	nucleus	91.63	94.26
KRH50371	Soybean	nucleus	64.65	65.26
KRG89300	Soybean	nucleus	64.65	63.47
GSMUA_Achr4P06480_001	Banana	nucleus	48.84	63.25
VIT_01s0011g04870.t01	Wine grape	nucleus	66.05	63.11
Bra026666.1-P	Field mustard	nucleus	45.12	62.18
CDY17676	Canola	nucleus	55.81	60.91
CDY40379	Canola	nucleus	55.35	60.71
CDX77824	Canola	nucleus	56.28	60.5
Bra017451.1-P	Field mustard	nucleus	44.65	60.0
Bra024888.1-P	Field mustard	nucleus	54.88	59.9
CDY63827	Canola	nucleus	54.42	59.69
GSMUA_AchrUn_...	Banana	nucleus	59.53	58.72
TraesCS3B01G260800.1	Wheat	nucleus	57.67	55.86
TraesCS3A01G231600.1	Wheat	nucleus	57.67	55.86
Zm00001d044081_P001	Maize	nucleus	58.14	55.56
GSMUA_Achr4P13440_001	Banana	nucleus	58.6	55.51
TraesCS3D01G221800.1	Wheat	nucleus	57.21	55.41
Os01t0643600-00	Rice	nucleus	58.6	55.02
CDY41083	Canola	nucleus	32.56	54.26
EES03343	Sorghum	nucleus	57.67	53.91
AT2G01430.1	Thale cress	plasma membrane	56.28	44.0
PGSC0003DMT400096970	Potato	nucleus	33.02	35.86
PGSC0003DMT400067540	Potato	nucleus	43.26	33.82
PGSC0003DMT400032546	Potato	nucleus	43.72	33.57
PGSC0003DMT400055199	Potato	nucleus	40.0	32.33
PGSC0003DMT400026968	Potato	nucleus	35.81	30.32
PGSC0003DMT400066838	Potato	nucleus	40.0	29.86
PGSC0003DMT400062081	Potato	nucleus	41.4	29.18
PGSC0003DMT400012615	Potato	nucleus	35.35	28.57
PGSC0003DMT400060951	Potato	nucleus	43.26	26.5
PGSC0003DMT400016146	Potato	nucleus	45.12	26.01

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102586567	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M1CZW3	PFAM:PF00046
PFAM:PF02183	EnsemblPlantsGene:PGSC0003DMG400030494	PGSC:PGSC0003DMG400030494	EnsemblPlants:PGSC0003DMT400078329	ScanProsite:PS00027	PFscan:PS50071
PANTHER:PTHR24326	PANTHER:PTHR24326:SF114	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000296208F
RefSeq:XP_015162725.1	SEG:seg	:	:	:	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030494]

Coordinates

chr5:-:4264483..4267821

Molecular Weight (calculated)

24533.1 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.880

Length

215 amino acids

Sequence
(BLAST)

001: MEIMPESSAC LELTMSIPGS SSNSSSFPSS GEGGGGRYNM MRDLELDINQ VPSSGNINDE EISMEEEEEE SSNNNINDNI NGASRKKLRL TKQQSFLLEE
101: SFRQNHTLNP KQKEALAMQL KLKARQVEVW FQNRRARSKL KQTEMECEYL KRWFGSLNEQ NRRLKKEVEE LRAMKVGPPT VLSPHSCHPL PASTLTMCPH
201: CERVTKTNVR DESRI

Best Arabidopsis Sequence Match ( AT2G01430.1 )
(BLAST)

001: MIKLLFTYIC TYTYKLYALY HMDYACVCMY KYKGIVTLQV CLFYIKLRVF LSNFTFSSSI LALKNPNNSL IKIMAILPEN SSNLDLTISV PGFSSSPLSD
101: EGSGGGRDQL RLDMNRLPSS EDGDDEEFSH DDGSAPPRKK LRLTREQSRL LEDSFRQNHT LNPKQKEVLA KHLMLRPRQI EVWFQNRRAR SKLKQTEMEC
201: EYLKRWFGSL TEENHRLHRE VEELRAMKVG PTTVNSASSL TMCPRCERVT PAASPSRAVV PVPAKKTFPP QERDR

Arabidopsis Description

ATHB-17Homeobox-leucine zipper protein ATHB-17 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9N6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.