Factsheet for PGSC0003DMT400066838

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090460.2.1	Tomato	nucleus	93.4	94.06
CDX71814	Canola	nucleus	57.64	58.25
KRH40151	Soybean	nucleus	45.14	56.77
CDY41168	Canola	nucleus	57.99	56.61
VIT_15s0021g01880.t01	Wine grape	nucleus	55.21	55.79
PGSC0003DMT400067540	Potato	nucleus	53.12	55.64
Bra007530.1-P	Field mustard	nucleus	59.03	54.66
KRH48783	Soybean	nucleus	60.07	54.57
KRH66562	Soybean	nucleus	58.68	54.52
AT3G60390.1	Thale cress	nucleus	59.03	53.97
PGSC0003DMT400032546	Potato	nucleus	52.08	53.57
KRH01102	Soybean	nucleus	53.47	53.1
CDX74693	Canola	nucleus	54.17	52.88
Bra004874.1-P	Field mustard	nucleus	54.17	52.88
AT2G44910.1	Thale cress	nucleus	55.9	50.63
CDY27404	Canola	nucleus	55.9	50.47
PGSC0003DMT400062081	Potato	nucleus	53.12	50.16
CDY37015	Canola	nucleus	55.21	49.53
Bra040335.1-P	Field mustard	nucleus	55.21	49.53
PGSC0003DMT400055199	Potato	nucleus	39.58	42.86
PGSC0003DMT400026968	Potato	nucleus	36.81	41.73
PGSC0003DMT400078329	Potato	nucleus	29.86	40.0
PGSC0003DMT400012615	Potato	nucleus	34.38	37.22
PGSC0003DMT400096970	Potato	nucleus	25.35	36.87
PGSC0003DMT400016146	Potato	nucleus	45.83	35.39
PGSC0003DMT400060951	Potato	nucleus	40.97	33.62

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102592333	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M1CGA5	PFAM:PF00046	PFAM:PF02183	PFAM:PF04618
EnsemblPlantsGene:PGSC0003DMG400025984	PGSC:PGSC0003DMG400025984	EnsemblPlants:PGSC0003DMT400066838	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51257
PANTHER:PTHR24326	PANTHER:PTHR24326:SF514	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00029562FA
RefSeq:XP_006347941.1	SEG:seg	:	:	:	:

Description

HD-ZIP protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025984]

Coordinates

chr1:-:69699773..69702503

Molecular Weight (calculated)

32231.1 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.797

Length

288 amino acids

Sequence
(BLAST)

001: MSGEKEDGLG LSLSLGIMSC PQNNHKIPPP FPLNLLPFMH HHQISSGRKD EGGERVRGGI DMNEPARMII ECDDEEDEEE DQVLMVSSPN STVSSVSGKR
101: SHDREENEGE RATSSLEDDG GDAAARKKLR LSKEQAAVLE DTFKEHNTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCENLTD
201: ENRRLQKEVS ELRALKLSPQ LYMNMSPPTT LTMCPQCERV AVSSSAASSS VTGANASRSH HHQAPVPLNK PWAAMFASKT LDVQRSQM

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.