Factsheet for PGSC0003DMT400062081

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400016146
PGSC0003DMT400023896
PGSC0003DMT400052841
PGSC0003DMT400060951
PGSC0003DMT400062081
PGSC0003DMT400062327
PGSC0003DMT400066838
PGSC0003DMT400068387
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT4G16780.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT4G16780.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT4G16780.1	PGSC0003DMT400069203	AT1G71230.1	21798944
AT4G16780.1	PGSC0003DMT400066838	AT3G60390.1	21798944
AT4G16780.1	PGSC0003DMT400062081	AT4G16780.1	21798944
AT4G16780.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT4G16780.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT4G16780.1	PGSC0003DMT400068387	AT4G17680.1	21798944
AT4G16780.1	PGSC0003DMT400016146	AT5G06710.1	21798944
AT4G16780.1	PGSC0003DMT400060951	AT5G06710.1	21798944
AT4G16780.1	PGSC0003DMT400062327	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060830.2.1	Tomato	nucleus	90.49	92.62
PGSC0003DMT400067540	Potato	nucleus	59.67	66.18
KRH77331	Soybean	nucleus	57.38	65.3
PGSC0003DMT400032546	Potato	nucleus	59.34	64.64
VIT_00s0299g00100.t01	Wine grape	nucleus	61.97	63.64
KRH28155	Soybean	nucleus	58.03	62.11
KRH57467	Soybean	nucleus	60.66	62.08
KRH04179	Soybean	nucleus	60.66	61.87
AT4G16780.1	Thale cress	nucleus	55.08	59.15
Bra040094.1-P	Field mustard	nucleus	54.1	57.89
GSMUA_Achr11P...	Banana	nucleus	45.25	55.87
GSMUA_Achr5P13530_001	Banana	nucleus	50.82	55.56
GSMUA_Achr2P10040_001	Banana	nucleus	52.46	54.79
GSMUA_Achr7P06950_001	Banana	nucleus	32.46	54.7
PGSC0003DMT400066838	Potato	nucleus	50.16	53.12
GSMUA_Achr4P21600_001	Banana	nucleus	47.87	52.71
GSMUA_Achr1P01670_001	Banana	nucleus	51.15	52.53
HORVU2Hr1G097940.2	Barley	nucleus	38.03	51.56
TraesCS2A01G415900.1	Wheat	nucleus	38.03	51.1
Zm00001d002754_P001	Maize	nucleus	37.7	50.66
TraesCS2B01G434900.1	Wheat	nucleus	38.03	50.43
TraesCS2D01G412900.1	Wheat	nucleus	37.7	50.0
EES12613	Sorghum	nucleus	38.03	49.79
GSMUA_Achr1P04360_001	Banana	nucleus	47.54	48.01
Os04t0548700-01	Rice	nucleus	38.36	47.37
PGSC0003DMT400055199	Potato	nucleus	37.38	42.86
PGSC0003DMT400026968	Potato	nucleus	35.08	42.13
PGSC0003DMT400096970	Potato	nucleus	26.89	41.41
PGSC0003DMT400078329	Potato	nucleus	29.18	41.4
Os10t0561800-01	Rice	nucleus	41.97	41.16
PGSC0003DMT400012615	Potato	nucleus	35.08	40.23
GSMUA_AchrUn_...	Banana	plastid	40.98	40.06
TraesCS1D01G220900.1	Wheat	nucleus	42.62	39.88
TraesCS1A01G219200.1	Wheat	nucleus	42.62	39.51
TraesCS1B01G232700.2	Wheat	nucleus	42.3	39.45
Zm00001d029934_P001	Maize	nucleus	41.31	39.25
EER94486	Sorghum	nucleus	42.62	37.57
PGSC0003DMT400016146	Potato	nucleus	44.26	36.19
HORVU1Hr1G055930.1	Barley	nucleus	41.64	35.18
PGSC0003DMT400060951	Potato	nucleus	40.33	35.04

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009628	GO:GO:0009641
GO:GO:0009653	GO:GO:0009719	GO:GO:0009733	GO:GO:0009735	GO:GO:0009826	GO:GO:0009987
GO:GO:0010016	GO:GO:0010017	GO:GO:0010218	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007
GO:GO:0042803	GO:GO:0043565	GO:GO:0045892	GO:GO:0048364	InterPro:HD-ZIP_N	InterPro:HTH_motif
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	UniProt:M1C8G7
PFAM:PF00046	PFAM:PF02183	PFAM:PF04618	EnsemblPlantsGene:PGSC0003DMG400024157	PGSC:PGSC0003DMG400024157	EnsemblPlants:PGSC0003DMT400062081
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF210	SMART:SM00340
SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI00029537CC	:	:	:

Description

Homeobox-leucine zipper protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024157]

Coordinates

chr6:-:44074572..44076612

Molecular Weight (calculated)

34484.7 Da

IEP (calculated)

8.092

GRAVY (calculated)

-0.868

Length

305 amino acids

Sequence
(BLAST)

001: MMGKEDLGLS LSLSFSAEKR TTTINLIPST IISPSSAFNN NYWTTHPPFP HSSPDLNTEA CRLVETKSFL KGIDVNRMPA TAEEEEGGVS SPNSTISSLS
101: GNKRSEREGN CTEENEMERA SSRGISDEED GETCRKKLRL TKEQSAVLED SFKDHHTLNP KQKLALAKRL GLRPRQVEVW FQNRRARTKL KQTEVDCEFL
201: KRCVENLTDE NRRLQKEVQE LRSLKHSPQF YMQMTPPTTL TMCPSCEHVA TGPTNTPVNI PPHRVGPPHQ HHQPMPLNMW GPSSTPISQG HYGQMDTYPT
301: FARQK

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.