Factsheet for VIT_00s0299g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0299g00100.t01
VIT_02s0012g00290.t01
VIT_03s0038g04360.t01
VIT_08s0007g06670.t01
VIT_13s0156g00260.t01
VIT_15s0021g01880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16780.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT4G16780.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT4G16780.1	VIT_00s0299g00100.t01	AT4G16780.1	21798944
AT4G16780.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944
AT4G16780.1	VIT_08s0007g06670.t01	AT5G06710.1	21798944
AT4G16780.1	VIT_13s0156g00260.t01	AT5G06710.1	21798944
AT4G16780.1	VIT_15s0021g01880.t01	AT5G47370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77331	Soybean	nucleus	71.72	79.48
KRH28155	Soybean	nucleus	75.42	78.6
KRH57467	Soybean	nucleus	78.11	77.85
KRH04179	Soybean	nucleus	76.43	75.92
GSMUA_Achr7P06950_001	Banana	nucleus	42.42	69.61
AT4G16780.1	Thale cress	nucleus	64.98	67.96
Bra040094.1-P	Field mustard	nucleus	64.31	67.02
VIT_15s0021g01880.t01	Wine grape	nucleus	63.3	65.96
Solyc06g060830.2.1	Tomato	nucleus	64.65	64.43
GSMUA_Achr5P13530_001	Banana	nucleus	60.27	64.16
GSMUA_Achr11P...	Banana	nucleus	52.53	63.16
PGSC0003DMT400062081	Potato	nucleus	63.64	61.97
GSMUA_Achr1P01670_001	Banana	nucleus	61.95	61.95
GSMUA_Achr2P10040_001	Banana	nucleus	59.93	60.96
GSMUA_Achr4P21600_001	Banana	nucleus	56.57	60.65
GSMUA_Achr1P04360_001	Banana	nucleus	58.92	57.95
Zm00001d002754_P001	Maize	nucleus	41.75	54.63
HORVU2Hr1G097940.2	Barley	nucleus	41.08	54.22
TraesCS2A01G415900.1	Wheat	nucleus	40.74	53.3
EES12613	Sorghum	nucleus	41.75	53.22
TraesCS2B01G434900.1	Wheat	nucleus	40.74	52.61
TraesCS2D01G412900.1	Wheat	nucleus	40.4	52.17
Os04t0548700-01	Rice	nucleus	40.74	48.99
VIT_00s0732g00010.t01	Wine grape	nucleus	45.79	48.06
VIT_18s0001g08410.t01	Wine grape	nucleus	42.76	47.04
VIT_01s0011g04870.t01	Wine grape	nucleus	35.02	46.22
GSMUA_AchrUn_...	Banana	plastid	46.8	44.55
Zm00001d029934_P001	Maize	nucleus	47.14	43.61
VIT_08s0007g06670.t01	Wine grape	nucleus	48.48	43.5
TraesCS1D01G220900.1	Wheat	nucleus	47.47	43.25
TraesCS1B01G232700.2	Wheat	nucleus	47.47	43.12
Os10t0561800-01	Rice	nucleus	45.12	43.09
EER94486	Sorghum	nucleus	50.17	43.06
TraesCS1A01G219200.1	Wheat	nucleus	47.47	42.86
VIT_13s0156g00260.t01	Wine grape	nucleus	51.52	42.74
HORVU1Hr1G055930.1	Barley	nucleus	47.47	39.06

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246436	wikigene:100246436	MapMan:15.5.3.1	ProteinID:CBI29502	ProteinID:CBI29502.3
ncoils:Coil	UniProt:D7TG79	EMBL:FN595789	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009628	GO:GO:0009641
GO:GO:0009653	GO:GO:0009719	GO:GO:0009733	GO:GO:0009735	GO:GO:0009826	GO:GO:0009987
GO:GO:0010016	GO:GO:0010017	GO:GO:0010218	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007
GO:GO:0042803	GO:GO:0043565	GO:GO:0045892	GO:GO:0048364	InterPro:HD-ZIP_N	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100246436	wikigene:LOC100246436	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PFAM:PF04618	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF210	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0001985DCD	ArrayExpress:VIT_00s0299g00100
EnsemblPlantsGene:VIT_00s0299g00100	EnsemblPlants:VIT_00s0299g00100.t01	unigene:Vvi.15300	RefSeq:XP_002263193	RefSeq:XP_002263193.1	RefSeq:XP_003635205
RefSeq:XP_003635205.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:22117099..22119210

Molecular Weight (calculated)

33506.5 Da

IEP (calculated)

7.787

GRAVY (calculated)

-0.824

Length

297 amino acids

Sequence
(BLAST)

001: MMVDKEDLGL SLSLSFPQDA HRPLQLNLMP SLLPASSSSP SPSPFALQKP SWHDAFPSSD RTSETCRGDA RSFLRGIDVN RLPSTADCEE EAGVSSPNST
101: ISSVSGKRSE REANGDEHEM ERACSRGISD EEDGDTSRKK LRLSKDQSAI LEENFKEHNT LNPKQKLALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC
201: EFLKRCCENL TEENRRLQKE VNELRALKLS PQFYMQMTPP TTLTMCPSCE RVAVPPPSSE ARSHQMATTH HRPIPINPWA TATPIPHRPF DALHPRS

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.