Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P10040_001 | Banana | nucleus | 68.42 | 57.88 |
| GSMUA_Achr5P13530_001 | Banana | nucleus | 62.75 | 55.56 |
| KRH77331 | Soybean | nucleus | 59.11 | 54.48 |
| GSMUA_Achr1P01670_001 | Banana | nucleus | 65.18 | 54.21 |
| PGSC0003DMT400067540 | Potato | nucleus | 59.92 | 53.82 |
| GSMUA_Achr3P07740_001 | Banana | nucleus | 42.11 | 53.61 |
| Solyc08g078300.2.1 | Tomato | nucleus | 60.32 | 53.21 |
| Solyc08g007270.2.1 | Tomato | nucleus | 58.7 | 52.73 |
| VIT_00s0299g00100.t01 | Wine grape | nucleus | 63.16 | 52.53 |
| Bra040094.1-P | Field mustard | nucleus | 60.32 | 52.28 |
| AT4G16780.1 | Thale cress | nucleus | 59.92 | 52.11 |
| GSMUA_Achr4P21600_001 | Banana | nucleus | 57.89 | 51.62 |
| KRH28155 | Soybean | nucleus | 58.7 | 50.88 |
| PGSC0003DMT400032546 | Potato | nucleus | 57.49 | 50.71 |
| KRH57467 | Soybean | nucleus | 61.13 | 50.67 |
| KRH04179 | Soybean | nucleus | 60.32 | 49.83 |
| GSMUA_Achr4P06480_001 | Banana | nucleus | 33.2 | 49.4 |
| GSMUA_Achr7P06950_001 | Banana | nucleus | 36.03 | 49.17 |
| Solyc06g060830.2.1 | Tomato | nucleus | 56.28 | 46.64 |
| GSMUA_Achr1P04360_001 | Banana | nucleus | 55.47 | 45.36 |
| PGSC0003DMT400062081 | Potato | nucleus | 55.87 | 45.25 |
| GSMUA_Achr7P15910_001 | Banana | nucleus | 27.53 | 44.16 |
| GSMUA_Achr3P15190_001 | Banana | nucleus | 41.7 | 43.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.25 | 42.2 |
| GSMUA_Achr8P22800_001 | Banana | nucleus | 44.53 | 41.51 |
| GSMUA_Achr4P01350_001 | Banana | nucleus | 42.51 | 41.18 |
| GSMUA_Achr9P09800_001 | Banana | nucleus | 40.08 | 41.08 |
| GSMUA_Achr7P27530_001 | Banana | nucleus | 42.51 | 40.86 |
| GSMUA_Achr7P02380_001 | Banana | nucleus | 47.37 | 40.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.94 | 40.22 |
| GSMUA_AchrUn_... | Banana | plastid | 50.61 | 40.06 |
| GSMUA_Achr4P13440_001 | Banana | nucleus | 36.44 | 39.65 |
| GSMUA_Achr10P... | Banana | nucleus | 29.15 | 39.56 |
| GSMUA_Achr7P05000_001 | Banana | nucleus | 28.34 | 37.63 |
| GSMUA_Achr9P15710_001 | Banana | nucleus | 47.37 | 37.5 |
| GSMUA_Achr8P26480_001 | Banana | nucleus | 42.51 | 37.37 |
| GSMUA_Achr8P05100_001 | Banana | nucleus | 41.7 | 36.27 |
| GSMUA_Achr6P30180_001 | Banana | nucleus | 36.44 | 35.71 |
| GSMUA_Achr9P26300_001 | Banana | nucleus | 37.25 | 35.66 |
| GSMUA_Achr6P31710_001 | Banana | nucleus | 40.89 | 35.31 |
| GSMUA_Achr2P04490_001 | Banana | nucleus | 32.39 | 35.09 |
| GSMUA_Achr1P10390_001 | Banana | nucleus | 32.39 | 34.48 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr11G20960_001 | EnsemblPlants:GSMUA_Achr11P20960_001 | EnsemblPlants:GSMUA_Achr11T20960_001 | InterPro:HD-ZIP_N | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | UniProt:M0RU26 | PFAM:PF00046 |
| PFAM:PF02183 | PFAM:PF04618 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF514 |
| SMART:SM00340 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI000296228F | SEG:seg | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_299.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G20960_001]
Coordinates
chr11:-:21776775..21777707
Molecular Weight (calculated)
27540.6 Da
IEP (calculated)
8.579
GRAVY (calculated)
-0.696
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MYILLSTGLE IVYCMHAESR PILDVNQAPS AAAGRNSEED GGVSSPNSRA SSATAKRSTE REAGSRGVSD EEDDGDGCRK KLRLSKDQSA ILEESFKEHS
101: TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CELLRRCCQD LTEENRRLQK EVLELRALKL SPQLYMHMTP PTTLTLCPSC ERACGSTSAA
201: LAAASSSSRN QPPAEYHQFL HQQRPVAAPW APIQLRPSFL DAPPQRS
101: TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CELLRRCCQD LTEENRRLQK EVLELRALKL SPQLYMHMTP PTTLTLCPSC ERACGSTSAA
201: LAAASSSSRN QPPAEYHQFL HQQRPVAAPW APIQLRPSFL DAPPQRS
001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS
Arabidopsis Description
HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.