Factsheet for GSMUA_Achr3P12320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P01580_001
GSMUA_Achr1P22590_001
GSMUA_Achr2P07390_001
GSMUA_Achr2P15170_001
GSMUA_Achr2P18200_001
GSMUA_Achr3P12320_001
GSMUA_Achr3P20020_001
GSMUA_Achr4P24050_001
GSMUA_Achr4P27220_001
GSMUA_Achr5P03320_001
GSMUA_Achr6P05330_001
GSMUA_Achr7P07440_001
GSMUA_Achr7P11120_001
GSMUA_Achr7P11130_001
GSMUA_Achr7P26060_001
GSMUA_Achr8P00050_001
GSMUA_Achr8P05970_001
GSMUA_Achr8P31110_001
GSMUA_Achr9P19430_001
GSMUA_Achr9P23190_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51910.1	GSMUA_Achr10P...	AT2G03500.1	21798944
AT5G51910.1	GSMUA_Achr6P05330_001	AT2G03500.1	21798944
AT5G51910.1	GSMUA_Achr1P22590_001	AT2G30050.1	21798944
AT5G51910.1	GSMUA_Achr7P26060_001	AT2G30050.1	21798944
AT5G51910.1	GSMUA_Achr8P31110_001	AT2G30050.1	21798944
AT5G51910.1	GSMUA_Achr9P19430_001	AT2G30050.1	21798944
AT5G51910.1	GSMUA_Achr1P01580_001	AT3G16980.1	21798944
AT5G51910.1	GSMUA_Achr4P24050_001	AT3G16980.1	21798944
AT5G51910.1	GSMUA_Achr2P15170_001	AT3G20420.1	21798944
AT5G51910.1	GSMUA_Achr7P11120_001	AT3G20420.1	21798944
AT5G51910.1	GSMUA_Achr7P11130_001	AT3G20420.1	21798944
AT5G51910.1	GSMUA_Achr10P...	AT3G29160.1	21798944
AT5G51910.1	GSMUA_AchrUn_...	AT3G29160.1	21798944
AT5G51910.1	GSMUA_Achr2P07390_001	AT3G47640.1	21798944
AT5G51910.1	GSMUA_Achr3P20020_001	AT3G47640.1	21798944
AT5G51910.1	GSMUA_AchrUn_...	AT3G47640.1	21798944
AT5G51910.1	GSMUA_Achr8P05970_001	AT4G04800.1	21798944
AT5G51910.1	GSMUA_Achr7P07440_001	AT4G16760.1	21798944
AT5G51910.1	GSMUA_Achr11P...	AT4G18020.1	21798944
AT5G51910.1	GSMUA_Achr2P18200_001	AT4G18020.1	21798944
AT5G51910.1	GSMUA_Achr9P23190_001	AT5G07840.1	21798944
AT5G51910.1	GSMUA_Achr11P...	AT5G08330.1	21798944
AT5G51910.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT5G51910.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT5G51910.1	GSMUA_Achr3P12320_001	AT5G51910.1	21798944
AT5G51910.1	GSMUA_Achr4P27220_001	AT5G51910.1	21798944
AT5G51910.1	GSMUA_Achr5P03320_001	AT5G51910.1	21798944
AT5G51910.1	GSMUA_Achr8P00050_001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	39.11	34.96
GSMUA_Achr4P27220_001	Banana	nucleus	37.13	34.09
GSMUA_Achr5P03320_001	Banana	cytosol	27.72	29.63
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	29.7	28.3
VIT_16s0022g02480.t01	Wine grape	nucleus	22.77	27.22
TraesCS4A01G355900.1	Wheat	nucleus	39.11	26.69
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	41.09	26.1
CDY27099	Canola	nucleus	34.16	24.73
GSMUA_AchrUn_...	Banana	nucleus	27.72	24.67
AT5G51910.1	Thale cress	nucleus	35.64	24.57
CDX95656	Canola	nucleus	35.64	24.57
CDX91612	Canola	nucleus	34.16	23.96
PGSC0003DMT400094424	Potato	cytosol	28.71	23.67
KRH35393	Soybean	nucleus	36.14	23.47
GSMUA_Achr10P...	Banana	nucleus	27.23	23.4
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	39.6	23.32
Bra022568.1-P	Field mustard	cytosol	34.16	23.23
GSMUA_Achr6P07930_001	Banana	cytosol	27.23	23.21
CDY53888	Canola	nucleus	35.64	23.15
Bra000395.1-P	Field mustard	nucleus	35.64	23.15
PGSC0003DMT400088049	Potato	cytosol	30.69	22.96
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	27.72	22.95
Bra004929.1-P	Field mustard	nucleus	36.63	22.84
CDX74756	Canola	nucleus	36.63	22.77
KRG91429	Soybean	nucleus	36.63	22.7
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	39.11	22.64
CDY18910	Canola	nucleus	36.14	22.46
Solyc03g006800.1.1	Tomato	nucleus	36.14	22.39
Zm00001d031725_P001	Maize	nucleus	38.61	22.29
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	23.27	22.27
KRH57263	Soybean	nucleus	38.12	22.25
VIT_15s0048g01150.t01	Wine grape	nucleus	37.13	22.12
TraesCS5D01G516300.1	Wheat	nucleus	37.62	22.09
GSMUA_Achr11P...	Banana	nucleus	27.23	22.09
GSMUA_Achr6P02720_001	Banana	nucleus	29.21	21.85
KRH48289	Soybean	nucleus	36.14	21.79
KRH03994	Soybean	nucleus	36.63	21.76
GSMUA_Achr4P00500_001	Banana	nucleus	29.21	21.69
GSMUA_Achr7P20990_001	Banana	nucleus	28.71	21.64
OQU80770	Sorghum	nucleus	38.12	21.45
KRH65181	Soybean	nucleus	35.64	21.43
GSMUA_Achr1P27500_001	Banana	nucleus	30.2	21.11
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	39.11	21.07
Os08t0544800-01	Rice	nucleus	38.61	20.91
GSMUA_Achr11P...	Banana	nucleus	29.21	20.56
PGSC0003DMT400062327	Potato	nucleus	36.63	20.22
GSMUA_Achr5P25030_001	Banana	nucleus	28.71	20.21
AT2G45680.1	Thale cress	cytosol	35.15	19.94
GSMUA_Achr7P02680_001	Banana	nucleus	28.71	19.73
GSMUA_Achr7P23010_001	Banana	nucleus	28.22	18.81
VIT_02s0025g04590.t01	Wine grape	nucleus	38.12	18.73
PGSC0003DMT400058534	Potato	nucleus	34.16	18.45
Solyc08g080150.1.1	Tomato	nucleus	33.66	18.38
GSMUA_Achr7P17990_001	Banana	nucleus	30.2	18.15
GSMUA_Achr6P17840_001	Banana	cytosol	33.66	17.53
Zm00001d006165_P001	Maize	nucleus	27.72	16.97
EER99208	Sorghum	nucleus	27.23	16.87
GSMUA_Achr6P36470_001	Banana	nucleus	30.69	16.32
TraesCS5B01G310000.1	Wheat	cytosol, nucleus, peroxisome	27.23	16.22
TraesCS5A01G309300.1	Wheat	cytosol, nucleus, peroxisome	26.73	15.98
TraesCS5D01G316300.1	Wheat	nucleus	26.24	15.87
HORVU5Hr1G080210.1	Barley	cytosol	21.29	15.75
Os09t0521300-00	Rice	nucleus	27.72	14.7
GSMUA_Achr10P...	Banana	nucleus	19.31	9.65

Protein Annotations

MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G12320_001	EnsemblPlants:GSMUA_Achr3P12320_001
EnsemblPlants:GSMUA_Achr3T12320_001	InterPro:IPR017887	UniProt:M0SDZ9	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072
PANTHER:PTHR31072:SF69	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000296B4AD	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G12320_001]

Coordinates

chr3:-:9108370..9109188

Molecular Weight (calculated)

20921.5 Da

IEP (calculated)

4.188

GRAVY (calculated)

-0.249

Length

202 amino acids

Sequence
(BLAST)

001: MPAACAARIF QLTRELGHKS DGETIRWLLQ HAEPAIIAAT GTGTVPAIAT VVDGAIKIPT EAPSSSSAGL TAVTAFYPVQ DPLLQGALWM LPQPTAMVEP
101: SGQAQIWTFP AASQIINLGG PHPMAATAVY PGAAPGPNVA TAAGGGEPRT NEQAVTSTDG KKQELQLMGG ARGRRRDALL ETEEESESDA EEEPPSESDA
201: ED

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.