Factsheet for GSMUA_Achr6P36470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P00500_001	Banana	nucleus	31.58	44.12
GSMUA_Achr6P02720_001	Banana	nucleus	30.53	42.96
GSMUA_Achr7P20990_001	Banana	nucleus	29.21	41.42
GSMUA_Achr7P17990_001	Banana	nucleus	30.53	34.52
GSMUA_AchrUn_...	Banana	nucleus	19.47	32.6
GSMUA_Achr10P...	Banana	nucleus	19.74	31.91
GSMUA_Achr5P03320_001	Banana	cytosol	15.53	31.22
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	20.0	31.15
GSMUA_Achr3P12320_001	Banana	cytosol	16.32	30.69
GSMUA_Achr11P...	Banana	nucleus	19.21	29.32
GSMUA_Achr1P27500_001	Banana	nucleus	21.32	28.03
GSMUA_Achr11P...	Banana	nucleus	20.79	27.53
GSMUA_Achr5P25030_001	Banana	nucleus	20.26	26.83
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	14.21	25.47
GSMUA_Achr7P23010_001	Banana	nucleus	20.26	25.41
GSMUA_Achr7P02680_001	Banana	nucleus	19.47	25.17
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	21.05	25.16
GSMUA_Achr4P27220_001	Banana	nucleus	13.95	24.09
GSMUA_Achr6P07930_001	Banana	cytosol	15.0	24.05
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	21.05	23.32
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	12.63	22.75
GSMUA_Achr11P...	Banana	nucleus	13.42	22.57
GSMUA_Achr6P17840_001	Banana	cytosol	21.05	20.62
GSMUA_Achr10P...	Banana	nucleus	20.79	19.55

Protein Annotations

MapMan:15.5.19	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G36470_001
EnsemblPlants:GSMUA_Achr6P36470_001	EnsemblPlants:GSMUA_Achr6T36470_001	InterPro:IPR017887	UniProt:M0TD89	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF40	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00029636D4	SEG:seg

Description

TCP-domain protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G36470_001]

Coordinates

chr6:-:34430157..34431415

Molecular Weight (calculated)

40908.8 Da

IEP (calculated)

8.689

GRAVY (calculated)

-0.568

Length

380 amino acids

Sequence
(BLAST)

001: MQWLISSRNI SFDLSLSSPA DPSPHSLSSF LPNSITTVCT SWHNPGMEGE SRGYRRPNDA LGFFEKKQED HSCSAYPSPA ISSTTTTAAG EPVVNPQNKP
101: PPKKIRNSNK DRHTKVEGRG RRIRVPALCA ARIFQLTREL GHKTDGETVE WLLQQAEPAV IAATGTGTIP AAAAFTSLST ISLRNSGSSV SASPHLLAAN
201: YFNSDRSFSF SSDGQSTSTS VFLNVNPCSK RGREPEIRQH RPHPLQNQIA VHGQASHGRM PGTLWPVTNP NTQDTMGGDD RSTWTLPDQL GSSNILRVSA
301: SSGLHSLNLC TSMAMLPSQQ LDLCWGGDGG TPASLDGYRS LSTAERMPSP TRQAHGDGLC GGTSGNLAKQ LIQEYNNKNM

Best Arabidopsis Sequence Match ( AT1G69690.1 )
(BLAST)

001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS

Arabidopsis Description

TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.