Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 33.86 | 28.32 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 32.8 | 28.18 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 29.63 | 27.72 |
| VIT_16s0022g02480.t01 | Wine grape | nucleus | 19.58 | 21.89 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 24.34 | 21.7 |
| GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 23.81 | 21.33 |
| KRH35393 | Soybean | nucleus | 33.33 | 20.26 |
| CDX95656 | Canola | nucleus | 31.22 | 20.14 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 25.93 | 20.08 |
| CDY27099 | Canola | nucleus | 29.1 | 19.71 |
| KRG91429 | Soybean | nucleus | 33.86 | 19.63 |
| AT5G51910.1 | Thale cress | nucleus | 30.16 | 19.45 |
| PGSC0003DMT400088049 | Potato | cytosol | 27.51 | 19.26 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 32.28 | 19.18 |
| CDX91612 | Canola | nucleus | 29.1 | 19.1 |
| Bra000395.1-P | Field mustard | nucleus | 31.22 | 18.97 |
| CDY53888 | Canola | nucleus | 31.22 | 18.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.75 | 18.94 |
| GSMUA_Achr6P02720_001 | Banana | nucleus | 26.98 | 18.89 |
| GSMUA_Achr10P... | Banana | nucleus | 23.28 | 18.72 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 26.45 | 18.66 |
| Bra004929.1-P | Field mustard | nucleus | 31.75 | 18.52 |
| Bra022568.1-P | Field mustard | cytosol | 29.1 | 18.52 |
| GSMUA_Achr11P... | Banana | nucleus | 24.34 | 18.47 |
| CDX74756 | Canola | nucleus | 31.75 | 18.46 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 33.33 | 18.37 |
| CDY18910 | Canola | nucleus | 31.22 | 18.15 |
| GSMUA_Achr6P07930_001 | Banana | cytosol | 22.75 | 18.14 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 25.93 | 18.01 |
| PGSC0003DMT400094424 | Potato | cytosol | 23.28 | 17.96 |
| KRH48289 | Soybean | nucleus | 31.75 | 17.91 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 26.98 | 17.77 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 31.75 | 17.7 |
| KRH65181 | Soybean | nucleus | 31.22 | 17.56 |
| GSMUA_Achr11P... | Banana | nucleus | 25.93 | 17.07 |
| KRH03994 | Soybean | nucleus | 30.69 | 17.06 |
| GSMUA_Achr1P27500_001 | Banana | nucleus | 25.93 | 16.95 |
| Solyc03g006800.1.1 | Tomato | nucleus | 29.1 | 16.87 |
| AT2G45680.1 | Thale cress | cytosol | 31.75 | 16.85 |
| KRH57263 | Soybean | nucleus | 30.69 | 16.76 |
| GSMUA_Achr7P02680_001 | Banana | nucleus | 25.4 | 16.33 |
| GSMUA_Achr7P23010_001 | Banana | nucleus | 25.4 | 15.84 |
| GSMUA_Achr6P36470_001 | Banana | nucleus | 31.22 | 15.53 |
| GSMUA_Achr6P17840_001 | Banana | cytosol | 31.75 | 15.46 |
| PGSC0003DMT400062327 | Potato | nucleus | 29.63 | 15.3 |
| GSMUA_Achr7P17990_001 | Banana | nucleus | 25.93 | 14.58 |
| VIT_02s0025g04590.t01 | Wine grape | nucleus | 30.16 | 13.87 |
| Solyc08g080150.1.1 | Tomato | nucleus | 26.98 | 13.78 |
| PGSC0003DMT400058534 | Potato | nucleus | 26.45 | 13.37 |
| GSMUA_Achr10P... | Banana | nucleus | 19.05 | 8.91 |
Protein Annotations
| MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G03320_001 | EnsemblPlants:GSMUA_Achr5P03320_001 |
| EnsemblPlants:GSMUA_Achr5T03320_001 | InterPro:IPR017887 | UniProt:M0SVB1 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF19 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0002966F08 | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G03320_001]
Coordinates
chr5:+:2299930..2300900
Molecular Weight (calculated)
19417.3 Da
IEP (calculated)
9.376
GRAVY (calculated)
-0.002
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAACAARIF QLTRELGHKS DGETIKWLLE QAEPAIIAAT GTGTVPAIAT NVGGTLQIPT EASSSAPLTS TSAPAADGGD APNKRRKKLQ PSRSEGSVAG
101: YFPLQDPLLP GGGTISIPAG LAPLGASGTQ AVIPGCNSRL VNCIFRNSLD KTLVLLVGPS RLPSITKQTG EACSYASWLT NVRKSNLVL
101: YFPLQDPLLP GGGTISIPAG LAPLGASGTQ AVIPGCNSRL VNCIFRNSLD KTLVLLVGPS RLPSITKQTG EACSYASWLT NVRKSNLVL
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.