Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr7P23010_001 | Banana | nucleus | 72.47 | 68.65 |
GSMUA_Achr7P02680_001 | Banana | nucleus | 65.51 | 63.95 |
GSMUA_Achr1P27500_001 | Banana | nucleus | 62.37 | 61.94 |
GSMUA_Achr5P25030_001 | Banana | nucleus | 60.98 | 60.98 |
GSMUA_AchrUn_... | Banana | nucleus | 44.6 | 56.39 |
GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 39.37 | 53.3 |
GSMUA_Achr11P... | Banana | nucleus | 45.3 | 52.21 |
GSMUA_Achr10P... | Banana | nucleus | 40.42 | 49.36 |
Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 47.74 | 42.28 |
EES01992 | Sorghum | nucleus | 47.74 | 42.15 |
Zm00001d011985_P001 | Maize | nucleus | 45.99 | 41.9 |
Os01t0924400-01 | Rice | nucleus | 45.3 | 41.01 |
TraesCS3D01G428700.1 | Wheat | nucleus | 45.3 | 38.69 |
TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 45.3 | 38.12 |
TraesCS3B01G470700.1 | Wheat | nucleus | 45.3 | 37.25 |
GSMUA_Achr6P07930_001 | Banana | cytosol | 28.92 | 35.02 |
GSMUA_Achr6P02720_001 | Banana | nucleus | 31.36 | 33.33 |
GSMUA_Achr7P20990_001 | Banana | nucleus | 30.66 | 32.84 |
GSMUA_Achr4P00500_001 | Banana | nucleus | 31.01 | 32.72 |
GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 25.09 | 29.51 |
GSMUA_Achr3P12320_001 | Banana | cytosol | 20.56 | 29.21 |
HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 44.95 | 27.74 |
GSMUA_Achr5P03320_001 | Banana | cytosol | 17.07 | 25.93 |
GSMUA_Achr7P17990_001 | Banana | nucleus | 28.57 | 24.4 |
GSMUA_Achr11P... | Banana | nucleus | 18.47 | 23.45 |
GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 25.78 | 23.27 |
GSMUA_Achr4P27220_001 | Banana | nucleus | 17.07 | 22.27 |
GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 15.68 | 21.33 |
GSMUA_Achr6P36470_001 | Banana | nucleus | 27.53 | 20.79 |
GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 24.39 | 20.41 |
GSMUA_Achr6P17840_001 | Banana | cytosol | 20.21 | 14.95 |
GSMUA_Achr10P... | Banana | nucleus | 19.16 | 13.61 |
Protein Annotations
MapMan:15.5.19 | MapMan:27.1.5.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr11G10940_001 |
EnsemblPlants:GSMUA_Achr11P10940_001 | EnsemblPlants:GSMUA_Achr11T10940_001 | InterPro:IPR017887 | UniProt:M0RR74 | PFAM:PF03634 | PFscan:PS51369 |
PANTHER:PTHR31072 | PANTHER:PTHR31072:SF4 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000294A103 | SEG:seg |
Description
Putative Transcription factor TCP20 [Source:GMGC_GENE;Acc:GSMUA_Achr11G10940_001]
Coordinates
chr11:+:8674132..8675103
Molecular Weight (calculated)
29897.1 Da
IEP (calculated)
9.808
GRAVY (calculated)
-0.579
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKGSSKLP QEVPNFHLQS DKSEPTTPPA TAAAESRDLS ASAGLERGRQ VVVAGKDEQR RQLAPKRSSN KDRHTKVDGR GRRIRMPALC AARIFQLTRE
101: LGHKSDGETI QWLLQQAEPS IIAATGTGTI PASAIAAAAS ASIRSHPGLW PPPVGGLNSG FLHAGAAAPS SSNLATGGGG DWSMGGFMPR IGLHGLEFPG
201: GNLGAVSFAA MLGGHGQQLP GLELGLSPEG HIGAMNPQGL SQFYQQMGQG RGGVGGGGSG QLHHHHHQQQ QHQQQARSEN DSQGSEQ
101: LGHKSDGETI QWLLQQAEPS IIAATGTGTI PASAIAAAAS ASIRSHPGLW PPPVGGLNSG FLHAGAAAPS SSNLATGGGG DWSMGGFMPR IGLHGLEFPG
201: GNLGAVSFAA MLGGHGQQLP GLELGLSPEG HIGAMNPQGL SQFYQQMGQG RGGVGGGGSG QLHHHHHQQQ QHQQQARSEN DSQGSEQ
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.