Factsheet for GSMUA_Achr11P01790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr2P22730_001
GSMUA_Achr4P00500_001
GSMUA_Achr4P11020_001
GSMUA_Achr4P16510_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr6P02720_001
GSMUA_Achr6P09710_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr8P14860_001
GSMUA_Achr8P18400_001
GSMUA_Achr8P34050_001
GSMUA_Achr9P23190_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08330.1	GSMUA_AchrUn_...	AT2G31985.1	21798944
AT5G08330.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT5G08330.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT5G08330.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT5G08330.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944
AT5G08330.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT5G08330.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT5G08330.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT5G08330.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT5G08330.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT5G08330.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944
AT5G08330.1	GSMUA_Achr4P11020_001	AT4G36690.1	21798944
AT5G08330.1	GSMUA_Achr4P16510_001	AT4G36690.1	21798944
AT5G08330.1	GSMUA_Achr9P23190_001	AT5G07840.1	21798944
AT5G08330.1	GSMUA_Achr11P...	AT5G08330.1	21798944
AT5G08330.1	GSMUA_Achr10P...	AT5G38420.1	21798944
AT5G08330.1	GSMUA_Achr2P22730_001	AT5G38420.1	21798944
AT5G08330.1	GSMUA_Achr6P09710_001	AT5G38420.1	21798944
AT5G08330.1	GSMUA_Achr8P18400_001	AT5G38420.1	21798944
AT5G08330.1	GSMUA_Achr8P34050_001	AT5G60340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018530_P001	Maize	plastid	55.74	65.7
Os03t0422702-00	Rice	cytosol, plastid	33.2	64.29
KRG89108	Soybean	nucleus, plastid	58.2	61.21
KRH36141	Soybean	nucleus	61.48	60.98
Os02t0828566-01	Rice	nucleus	58.2	60.17
Bra026506.1-P	Field mustard	cytosol, mitochondrion, nucleus	52.87	59.72
VIT_10s0042g00170.t01	Wine grape	nucleus	62.3	59.61
CDY16842	Canola	nucleus	52.46	59.53
CDX87179	Canola	nucleus	52.05	59.07
KRH40904	Soybean	nucleus	57.79	59.0
KRH40902	Soybean	nucleus	57.79	58.75
CDY44770	Canola	cytosol	53.69	58.22
KRG90619	Soybean	nucleus	57.38	57.85
EES07800	Sorghum	plastid	57.38	57.61
Bra028662.1-P	Field mustard	nucleus	52.87	56.33
CDY45760	Canola	nucleus	55.74	56.2
AT5G08330.1	Thale cress	nucleus	54.92	56.07
Bra009338.1-P	Field mustard	nucleus	54.1	55.93
Solyc04g009180.1.1	Tomato	nucleus	60.66	55.64
Bra009667.1-P	Field mustard	nucleus	56.15	54.8
CDY21536	Canola	nucleus	52.87	54.66
Solyc01g008230.2.1	Tomato	nucleus	54.51	53.41
CDX88010	Canola	nucleus	55.33	53.36
TraesCS6B01G462100.1	Wheat	mitochondrion	43.03	53.03
TraesCS6A01G412800.1	Wheat	mitochondrion	43.03	53.03
TraesCS6D01G397000.1	Wheat	mitochondrion	42.62	52.79
AT5G23280.1	Thale cress	nucleus	53.69	52.4
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	56.97	52.06
GSMUA_Achr10P...	Banana	nucleus	29.51	30.64
GSMUA_AchrUn_...	Banana	nucleus	27.46	29.52
GSMUA_Achr6P02720_001	Banana	nucleus	31.97	28.89
PGSC0003DMT400042166	Potato	cytosol	52.87	28.79
GSMUA_Achr11P...	Banana	nucleus	29.1	28.51
GSMUA_Achr3P12320_001	Banana	cytosol	22.95	27.72
GSMUA_Achr1P27500_001	Banana	nucleus	31.97	26.99
GSMUA_Achr4P00500_001	Banana	nucleus	29.51	26.47
GSMUA_Achr7P20990_001	Banana	nucleus	28.69	26.12
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	22.54	25.94
GSMUA_Achr5P03320_001	Banana	cytosol	20.08	25.93
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	33.2	25.47
GSMUA_Achr11P...	Banana	nucleus	29.51	25.09
GSMUA_Achr11P...	Banana	nucleus	22.95	24.78
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	21.31	24.64
GSMUA_Achr4P27220_001	Banana	nucleus	22.13	24.55
GSMUA_Achr7P23010_001	Banana	nucleus	29.51	23.76
GSMUA_Achr5P25030_001	Banana	nucleus	27.05	23.0
GSMUA_Achr7P02680_001	Banana	nucleus	27.05	22.45
GSMUA_Achr7P17990_001	Banana	nucleus	30.33	22.02
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	30.74	21.87
GSMUA_Achr6P07930_001	Banana	cytosol	20.49	21.1
GSMUA_Achr6P36470_001	Banana	nucleus	31.15	20.0
GSMUA_Achr6P17840_001	Banana	cytosol	29.51	18.56
GSMUA_Achr10P...	Banana	nucleus	25.41	15.35

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G01790_001
EnsemblPlants:GSMUA_Achr11P01790_001	EnsemblPlants:GSMUA_Achr11T01790_001	InterPro:IPR017887	UniProt:M0RNK9	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF7	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002959220	SEG:seg

Description

Transcription factor TCP7 [Source:GMGC_GENE;Acc:GSMUA_Achr11G01790_001]

Coordinates

chr11:+:1206858..1208337

Molecular Weight (calculated)

24237.6 Da

IEP (calculated)

10.461

GRAVY (calculated)

-0.170

Length

244 amino acids

Sequence
(BLAST)

001: MSNPDGGTSG SGPLEGQKQQ QRQLAPAGGN GALAVKKPPS KDRHSKVDGR GRRIRMPIIC AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT
101: PASFSTVSSS LLRGAAGNSG AGAPLSLPTP SSSAAAVSGG KEDTVTGGVG GVSSGAGMGI GPAAGFWALP ARQDFGQVWS FATPEMVPVT LNGRFAGQPM
201: GEASAARVGN YLPLAGHLNL LASLSGAPGA AAAGAAAGTD DEAR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.