Factsheet for GSMUA_Achr4P16510_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P12320_001
GSMUA_Achr3P24290_001
GSMUA_Achr4P27220_001
GSMUA_Achr5P03320_001
GSMUA_Achr7P00820_001
GSMUA_Achr7P08090_001
GSMUA_Achr7P10650_001
GSMUA_Achr8P00050_001
GSMUA_Achr8P15820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	GSMUA_Achr8P15820_001	AT1G28360.1	21798944
AT4G36690.1	GSMUA_Achr10P...	AT2G39760.1	21798944
AT4G36690.1	GSMUA_Achr7P10650_001	AT2G39760.1	21798944
AT4G36690.1	GSMUA_Achr10P...	AT3G50670.1	21798944
AT4G36690.1	GSMUA_Achr7P00820_001	AT3G50670.1	21798944
AT4G36690.1	GSMUA_Achr7P08090_001	AT3G50670.1	21798944
AT4G36690.1	GSMUA_Achr11P...	AT5G49400.1	21798944
AT4G36690.1	GSMUA_Achr3P24290_001	AT5G49400.1	21798944
AT4G36690.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr3P12320_001	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr4P27220_001	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr5P03320_001	AT5G51910.1	21798944
AT4G36690.1	GSMUA_Achr8P00050_001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040069	Potato	cytosol	55.08	83.6
CDY67096	Canola	mitochondrion	43.01	82.19
CDY12868	Canola	mitochondrion	39.19	81.14
Bra040973.1-P	Field mustard	nucleus	44.07	76.47
CDX75589	Canola	mitochondrion	56.99	75.77
HORVU5Hr1G090000.2	Barley	nucleus	60.81	72.29
AT1G60830.2	Thale cress	nucleus	16.53	70.27
CDY40492	Canola	nucleus	21.61	68.0
CDY55407	Canola	nucleus	16.1	67.86
GSMUA_Achr4P11020_001	Banana	nucleus	81.57	66.84
VIT_04s0023g01450.t01	Wine grape	nucleus	77.75	64.96
CDY12869	Canola	nucleus	67.58	64.31
EES08974	Sorghum	nucleus	74.15	64.22
Zm00001d048655_P012	Maize	extracellular, nucleus	73.31	64.19
Bra027119.1-P	Field mustard	nucleus	65.89	63.34
VIT_13s0139g00410.t01	Wine grape	cytosol	9.11	63.24
PGSC0003DMT400033041	Potato	nucleus	73.73	62.59
TraesCS4D01G143400.3	Wheat	nucleus	72.67	62.48
HORVU4Hr1G029030.3	Barley	nucleus	72.67	62.36
Solyc02g085570.2.1	Tomato	nucleus	73.31	62.01
Solyc02g062920.2.1	Tomato	nucleus	72.25	60.89
CDY40481	Canola	nucleus	65.68	60.08
TraesCS4D01G150000.4	Wheat	nucleus	72.88	60.03
TraesCS4B01G145600.4	Wheat	nucleus	72.25	59.93
CDY35472	Canola	nucleus	69.49	59.64
Bra010569.1-P	Field mustard	nucleus	69.49	59.21
CDY24773	Canola	nucleus	69.49	59.21
Os11t0636900-02	Rice	nucleus	71.4	58.71
TraesCS4A01G171800.3	Wheat	nucleus	72.25	58.69
TraesCSU01G068100.3	Wheat	nucleus	72.03	58.62
TraesCS4A01G165000.4	Wheat	nucleus	72.46	58.46
Zm00001d048777_P007	Maize	nucleus	73.31	57.86
KRH56450	Soybean	nucleus	74.15	57.85
AT4G36690.1	Thale cress	nucleus	69.7	57.42
KRH64800	Soybean	nucleus	72.88	57.33
CDY40493	Canola	nucleus	34.11	57.3
KXG28995	Sorghum	nucleus	72.25	56.83
Bra031477.1-P	Field mustard	nucleus	71.4	56.73
CDY46188	Canola	nucleus	71.4	56.73
PGSC0003DMT400000919	Potato	nucleus	72.67	56.69
AT1G60900.1	Thale cress	nucleus	70.13	56.2
Solyc12g008750.1.1	Tomato	nucleus	72.03	56.01
CDY03767	Canola	nucleus	71.82	55.85
HORVU4Hr1G038850.14	Barley	nucleus	71.19	55.54
Bra040940.1-P	Field mustard	nucleus	65.89	55.34
Bra031341.1-P	Field mustard	nucleus	29.03	54.58
CDY66742	Canola	nucleus	65.25	54.32
CDY55589	Canola	mitochondrion	28.81	54.18
Zm00001d007632_P003	Maize	nucleus	71.4	53.58
HORVU5Hr1G089980.2	Barley	nucleus, plastid	63.77	52.9
Bra010656.1-P	Field mustard	mitochondrion, plastid	28.18	52.57
CDY30313	Canola	nucleus	65.47	52.55
TraesCS5A01G366000.1	Wheat	nucleus	65.47	50.99
GSMUA_Achr1P06860_001	Banana	nucleus	61.44	50.17
TraesCS5D01G375600.1	Wheat	nucleus	64.83	50.08
TraesCS5B01G368400.1	Wheat	nucleus	63.35	47.46
TraesCS2A01G122400.1	Wheat	nucleus	15.68	45.4
TraesCS2B01G144600.1	Wheat	nucleus	15.47	44.79
KXG29128	Sorghum	nucleus	59.75	44.55
TraesCS5B01G041900.1	Wheat	nucleus	15.25	43.37
TraesCS5A01G040700.1	Wheat	cytosol	15.25	43.37
VIT_13s0139g00390.t01	Wine grape	plasma membrane	12.5	37.82
TraesCS5D01G071700.1	Wheat	nucleus	12.29	33.72
TraesCS5D01G071600.1	Wheat	nucleus	12.29	31.02
TraesCS5B01G067400.1	Wheat	nucleus	12.29	31.02
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, golgi, plastid	12.08	12.56
GSMUA_Achr11P...	Banana	nucleus	11.44	11.37

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G16510_001	EnsemblPlants:GSMUA_Achr4P16510_001
EnsemblPlants:GSMUA_Achr4T16510_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0SPG5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGRFAMs:TIGR01642	InterPro:U2AF_lg	UniParc:UPI000294E9BE	SEG:seg	:

Description

Splicing factor U2af large subunit B [Source:GMGC_GENE;Acc:GSMUA_Achr4G16510_001]

Coordinates

chr4:-:14952606..14962231

Molecular Weight (calculated)

51115.6 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.351

Length

472 amino acids

Sequence
(BLAST)

001: MGLHSLSISG FDHSGEINHD VGFLIFYRND PFRHRDHDRD RDRDKDRDGH RSHRSRSHRS RSLNNLFPNN SKRISGFDMA PPASALLPGA TATGQLPGAT
101: PAIPGMFPNM FSLAAGQIPT IPIMPVQAMT QQATRHARRV YVGGLPPTAN EQSVATFFSQ VMFAIGGNTA GPGDAVVNVY INHEKKFAFV EMRSVEEASN
201: AMALDGIIFE GAPVKVRRPS DYNPSLAAAL GPSQPNPNLN LAAVGLTPGS TGGLEGPDRI FVGGLPYYFT EAQVRELLES FGPLRGFDLV KDRETGNSKG
301: YAFCVYQDLS VTDIACAALN GIKMGDKTLT VRRANQGAVQ PRPEHESVLL QAQQQVALQK LVYQAGSLPT KVVCLTQVVS PDELNDDEEY EDIMEDMRAE
401: GGKYGKLVNV VIPRPVPNGE PAPGVGKVFL EYADIDGSTK ARQGLNGRKF GGNQVAAVFY PENKFALGEY DG

Best Arabidopsis Sequence Match ( AT4G36690.4 )
(BLAST)

001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGGR RSRRSRSRSK DRSERRTRSR SPSKSKQRVS GFDMAPPASA MLAAGAAVTG QVPPAPPTLP GAGMFPNMFP LPTGQSFGGL
201: SMMPIQAMTQ QATRHARRVY VGGLSPTANE QSVATFFSQV MAAVGGNTAG PGDAVVNVYI NHEKKFAFVE MRSVEEASNA MSLDGIIFEG APVKVRRPSD
301: YNPSLAATLG PSQPSPHLNL AAVGLTPGAS GGLEGPDRIF VGGLPYYFTE SQVRELLESF GGLKGFDLVK DRETGNSKGY AFCVYQDLSV TDIACAALNG
401: IKMGDKTLTV RRANQGTMLQ KPEQENVLLH AQQQIAFQRV MLQPGAVATT VVCLTQVVTE DELRDDEEYG DIMEDMRQEG GKFGALTNVV IPRPSPNGEP
501: VAGLGKVFLK YADTDGSTRA RFGMNGRKFG GNEVVAVYYP EDKFEQGDYG A

Arabidopsis Description

U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.