Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55407 | Canola | nucleus | 20.93 | 96.43 |
| CDY12868 | Canola | mitochondrion | 40.31 | 91.23 |
| CDY40492 | Canola | nucleus | 26.16 | 90.0 |
| AT1G60830.2 | Thale cress | nucleus | 18.22 | 84.68 |
| CDY12869 | Canola | nucleus | 77.33 | 80.44 |
| PGSC0003DMT400040069 | Potato | cytosol | 47.48 | 78.78 |
| CDY67096 | Canola | mitochondrion | 36.24 | 75.71 |
| CDX75589 | Canola | mitochondrion | 49.42 | 71.83 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 51.16 | 66.5 |
| AT1G60900.1 | Thale cress | nucleus | 75.19 | 65.87 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 60.08 | 65.68 |
| CDY46188 | Canola | nucleus | 75.0 | 65.15 |
| CDY40493 | Canola | nucleus | 35.47 | 65.12 |
| CDY55589 | Canola | mitochondrion | 30.81 | 63.35 |
| CDY03767 | Canola | nucleus | 74.22 | 63.1 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 8.14 | 61.76 |
| Solyc02g062920.2.1 | Tomato | nucleus | 65.89 | 60.71 |
| CDY24773 | Canola | nucleus | 64.73 | 60.29 |
| Solyc02g085570.2.1 | Tomato | nucleus | 64.53 | 59.68 |
| EES08974 | Sorghum | nucleus | 62.98 | 59.63 |
| CDY35472 | Canola | nucleus | 63.18 | 59.27 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 66.09 | 59.2 |
| HORVU4Hr1G029030.3 | Barley | nucleus | 62.98 | 59.09 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 62.4 | 58.65 |
| PGSC0003DMT400033041 | Potato | nucleus | 62.98 | 58.45 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 63.37 | 57.47 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 63.57 | 57.24 |
| KRH64800 | Soybean | nucleus | 65.5 | 56.33 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 63.37 | 55.9 |
| Solyc12g008750.1.1 | Tomato | nucleus | 65.5 | 55.68 |
| PGSC0003DMT400000919 | Potato | nucleus | 65.12 | 55.54 |
| TraesCSU01G068100.3 | Wheat | nucleus | 62.4 | 55.52 |
| TraesCS4A01G171800.3 | Wheat | nucleus | 62.21 | 55.25 |
| KRH56450 | Soybean | nucleus | 64.73 | 55.21 |
| Os11t0636900-02 | Rice | nucleus | 60.85 | 54.7 |
| CDY66742 | Canola | nucleus | 59.88 | 54.5 |
| KXG28995 | Sorghum | nucleus | 62.4 | 53.67 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 58.33 | 52.9 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 61.24 | 52.23 |
| CDY30313 | Canola | nucleus | 59.11 | 51.87 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 59.69 | 50.83 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 58.53 | 49.43 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 57.36 | 46.98 |
| KXG29128 | Sorghum | nucleus | 50.39 | 41.07 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 12.21 | 38.65 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 11.82 | 37.42 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 12.02 | 37.35 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 11.82 | 36.75 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 10.85 | 35.9 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 10.66 | 31.98 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 10.27 | 28.34 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 10.27 | 28.34 |
| Zm00001d007635_P004 | Maize | nucleus | 25.58 | 18.75 |
| CDX84685 | Canola | nucleus | 8.91 | 12.37 |
| CDX79530 | Canola | nucleus | 18.22 | 7.81 |
| CDX84686 | Canola | nucleus | 8.72 | 5.02 |
Protein Annotations
| MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | GO:A0A078HRZ0 | UniProt:A0A078HRZ0 | EnsemblPlants:CDY40481 | ProteinID:CDY40481 |
| ProteinID:CDY40481.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00069738001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF80 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TIGRFAMs:TIGR01642 | InterPro:U2AF_lg | UniParc:UPI0004EDAD68 |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g14390DBnaC09g14390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRZ0]
Coordinates
chrLK032472:-:87033..92281
Molecular Weight (calculated)
57031.3 Da
IEP (calculated)
9.350
GRAVY (calculated)
-0.710
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHDEANGDE NNKNENYLAL GLESSPFKSL GGKDSKSRQD VEKESSRSRG KGRESERSRE RDRERDRHSE RDDDDHRIRR RRSRDREREE RHRRRSRSRS
101: RSRSRRSEHR SRSRSRPPSK SKRVSGFDMP PPSSAMLAPT AVAAAVLCQW PHQIPLISTQ LGALSLLPVQ AMTQQATRHA RRVYVGGLPP TANEQSVATF
201: FSQVMSAVGG NTAGPGDAVV NVYINHEKKF AFVEMRSVEE ASNAMALDGI ILEGVPVKVK RPTDYNPSLA AALGPSQPNP NLNLAAVGFS SGSTGGLEGP
301: DRLFVGGIPY YLTEDQIREL LESFGPLRGF NLVKDRESGN SMGYAFCVFQ DPSVTDIACA ALNGIKMGNK TLTVRRAVQG AIQPKPEQED ILLHAQQQIA
401: LQRLMLQPGG TPTKIVCLTQ VVTANVLGDD KEYEDIMEDM RQEGGKFGNL VNVVIPRPNP EHDPTPGVGK VFLEYADLDS AAKARSGMNG RKFDGNQVVA
501: VYYPENKYAQ GDYEAC
101: RSRSRRSEHR SRSRSRPPSK SKRVSGFDMP PPSSAMLAPT AVAAAVLCQW PHQIPLISTQ LGALSLLPVQ AMTQQATRHA RRVYVGGLPP TANEQSVATF
201: FSQVMSAVGG NTAGPGDAVV NVYINHEKKF AFVEMRSVEE ASNAMALDGI ILEGVPVKVK RPTDYNPSLA AALGPSQPNP NLNLAAVGFS SGSTGGLEGP
301: DRLFVGGIPY YLTEDQIREL LESFGPLRGF NLVKDRESGN SMGYAFCVFQ DPSVTDIACA ALNGIKMGNK TLTVRRAVQG AIQPKPEQED ILLHAQQQIA
401: LQRLMLQPGG TPTKIVCLTQ VVTANVLGDD KEYEDIMEDM RQEGGKFGNL VNVVIPRPNP EHDPTPGVGK VFLEYADLDS AAKARSGMNG RKFDGNQVVA
501: VYYPENKYAQ GDYEAC
001: MLQPGGTPTK IVCLTQVVTA DDLRDDAEYA DIMEDMSQEG GKFGNLVNVV IPRPNPDHDP TPGVGKVFLE YADVDGSSKA RSGMNGRKFG GNQVVAVYYP
101: EDKYAQGDYE D
101: EDKYAQGDYE D
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6C1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.