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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G128600.1
TraesCS1A01G176500.1
TraesCS1A01G314200.1
TraesCS1B01G146600.1
TraesCS1B01G203600.1
TraesCS1B01G326500.1
TraesCS1D01G124800.1
TraesCS1D01G162500.1
TraesCS1D01G314700.1
TraesCS2A01G255800.1
TraesCS2D01G266900.1
TraesCS3A01G328100.1
TraesCS3B01G357600.1
TraesCS3D01G321700.1
TraesCS4A01G355900.1
TraesCS5A01G022300.1
TraesCS5A01G309300.1
TraesCS5B01G310000.1
TraesCS5B01G516200.1
TraesCS5D01G316300.1
TraesCS5D01G516300.1
TraesCS7A01G422700.1
TraesCS7B01G323100.1
TraesCS7D01G415100.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G36690.1 TraesCS1A01G314200.1 AT1G28360.1 21798944
AT4G36690.1 TraesCS1B01G326500.1 AT1G28360.1 21798944
AT4G36690.1 TraesCS1D01G314700.1 AT1G28360.1 21798944
AT4G36690.1 TraesCS3A01G328100.1 AT1G28360.1 21798944
AT4G36690.1 TraesCS3B01G357600.1 AT1G28360.1 21798944
AT4G36690.1 TraesCS3D01G321700.1 AT1G28360.1 21798944
AT4G36690.1 TraesCS2A01G255800.1 AT2G39760.1 21798944
AT4G36690.1 TraesCS2D01G266900.1 AT2G39760.1 21798944
AT4G36690.1 TraesCS1A01G128600.1 AT3G50670.1 21798944
AT4G36690.1 TraesCS1A01G176500.1 AT3G50670.1 21798944
AT4G36690.1 TraesCS1B01G146600.1 AT3G50670.1 21798944
AT4G36690.1 TraesCS1B01G203600.1 AT3G50670.1 21798944
AT4G36690.1 TraesCS1D01G124800.1 AT3G50670.1 21798944
AT4G36690.1 TraesCS1D01G162500.1 AT3G50670.1 21798944
AT4G36690.1 TraesCS5A01G022300.1 AT5G49400.1 21798944
AT4G36690.1 TraesCS7A01G422700.1 AT5G49400.1 21798944
AT4G36690.1 TraesCS7B01G323100.1 AT5G49400.1 21798944
AT4G36690.1 TraesCS7D01G415100.1 AT5G49400.1 21798944
AT4G36690.1 TraesCS4A01G355900.1 AT5G51910.1 21798944
AT4G36690.1 TraesCS5A01G309300.1 AT5G51910.1 21798944
AT4G36690.1 TraesCS5B01G310000.1 AT5G51910.1 21798944
AT4G36690.1 TraesCS5B01G516200.1 AT5G51910.1 21798944
AT4G36690.1 TraesCS5D01G316300.1 AT5G51910.1 21798944
AT4G36690.1 TraesCS5D01G516300.1 AT5G51910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G145600.4 Wheat nucleus 91.97 94.55
TraesCS4D01G150000.4 Wheat nucleus 92.14 94.07
PGSC0003DMT400040069 Potato cytosol 42.73 80.39
HORVU4Hr1G038850.14 Barley nucleus 82.91 80.17
CDY67096 Canola mitochondrion 33.16 78.54
CDY12868 Canola mitochondrion 30.6 78.51
Bra040973.1-P Field mustard nucleus 34.19 73.53
CDX75589 Canola mitochondrion 44.44 73.24
GSMUA_Achr4P16510_001 Banana nucleus 58.46 72.46
KXG28995 Sorghum nucleus 73.5 71.67
AT1G60830.2 Thale cress nucleus 13.5 71.17
Zm00001d048777_P007 Maize nucleus 71.79 70.23
GSMUA_Achr4P11020_001 Banana nucleus 66.32 67.36
CDY55407 Canola nucleus 12.82 66.96
TraesCS4A01G171800.3 Wheat nucleus 66.32 66.78
CDY40492 Canola nucleus 17.09 66.67
Zm00001d007632_P003 Maize nucleus 70.43 65.5
VIT_04s0023g01450.t01 Wine grape nucleus 62.56 64.78
Solyc02g062920.2.1 Tomato nucleus 61.03 63.75
CDY40481 Canola nucleus 55.9 63.37
CDY12869 Canola nucleus 53.68 63.31
Solyc02g085570.2.1 Tomato nucleus 60.34 63.26
PGSC0003DMT400033041 Potato nucleus 59.49 62.59
Bra027119.1-P Field mustard nucleus 52.14 62.12
KRH64800 Soybean nucleus 63.42 61.83
CDY35472 Canola nucleus 57.61 61.27
TraesCS5A01G366000.1 Wheat nucleus 63.42 61.22
AT1G60900.1 Thale cress nucleus 61.37 60.95
CDY24773 Canola nucleus 57.61 60.83
Bra010569.1-P Field mustard nucleus 57.61 60.83
KRH56450 Soybean nucleus 62.56 60.5
VIT_13s0139g00410.t01 Wine grape cytosol 7.01 60.29
AT4G36690.1 Thale cress nucleus 58.8 60.03
Bra031477.1-P Field mustard nucleus 60.51 59.6
CDY46188 Canola nucleus 60.51 59.6
Bra040940.1-P Field mustard nucleus 56.75 59.07
CDY66742 Canola nucleus 56.41 58.2
CDY03767 Canola nucleus 59.83 57.66
CDY30313 Canola nucleus 57.27 56.97
Solyc12g008750.1.1 Tomato nucleus 58.97 56.84
PGSC0003DMT400000919 Potato nucleus 58.29 56.36
CDY40493 Canola nucleus 26.32 54.8
CDY55589 Canola mitochondrion 22.73 52.99
Bra010656.1-P Field mustard mitochondrion, plastid 22.91 52.96
Bra031341.1-P Field mustard nucleus 22.22 51.79
TraesCS2A01G122400.1 Wheat nucleus 12.82 46.01
TraesCS5A01G040700.1 Wheat cytosol 12.99 45.78
VIT_13s0139g00390.t01 Wine grape plasma membrane 9.06 33.97
Protein Annotations
MapMan:16.4.1.2.11.2Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006397
GO:GO:0008150GO:GO:0008152GO:GO:0009987InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076PFscan:PS50102PANTHER:PTHR23139PANTHER:PTHR23139:SF80InterPro:RBD_domain_sfInterPro:RRM_dom
SMART:SM00360SUPFAM:SSF54928TIGRFAMs:TIGR01642EnsemblPlantsGene:TraesCS4A01G165000EnsemblPlants:TraesCS4A01G165000.4InterPro:U2AF_lg
TIGR:cd12230TIGR:cd12231TIGR:cd12232SEG:seg::
Description
No Description!
Coordinates
chr4A:+:385768275..385774186
Molecular Weight (calculated)
65570.6 Da
IEP (calculated)
9.109
GRAVY (calculated)
-1.011
Length
585 amino acids
Sequence
(BLAST)
001: MAEYEERYEG NCDPAAAAVT GGAPPTKPSG FSDQPDGRSQ QEVQPHEGRS SKSRERDRGR EKDKDKERDR EHGRDRERGR DKDRERDRGD RDREHDRHHR
101: EHRERSEKRE YHERSEKREH RERSEKREHR GHSDDHDRHR SRGRDVERRD RDRDGHRRHR SRSRSKGRER RSRSRSRSRS KSKRVSGFDQ GPLQSIPMVT
201: PGTTPGQLPA VAPLITGMLP NMFNFTAPTQ FNPLVMQPQA MTQQATRHAR RVYVGGLPPT ANEQTVAIYF NQVMAAIGGN TAGPGDAVLN VYINHDKKFA
301: FVEMRSVEEA SNAMALDGIM FEGAPVKVRR PTDYNPSLAA ALGPSQPNPN LNLGAVGLTP GSAGGLEGPD RIFVGGLPYY FTEAQVRELL ESFGPLRGFD
401: LVKDRETGNS KGYAFCVYQD LNVTDIACAA LNGIKMGDKT LTVRRANQGT SQPRPEQETI LLHAQQQVQM QKLVLQVGGA LPTKVVCLTQ VVSADELRDD
501: EEYEDILEDM REEGRKYGNL VKAVIPRPDP SGAAVPGVGK VFLEYADIDG STKAKVGMHG RKFGGNQVVA VFYPENKFAD GDYDD
Best Arabidopsis Sequence Match ( AT4G36690.1 )
(BLAST)
001: MSEFEDHEGN GTVADAIYDE ENGGRDGEIE DQLDSKPKRE SRDHERETSR SKDREREKGR DKDRERDSEV SRRSRDRDGE KSKERSRDKD RDHRERHHRS
101: SRHRDHSRER GERRERGGRD DDDYRRSRDR DHDRRRDDRG GRRSRRSRSR SKDRSERRTR SRSPSKSKQR VSGFDMAPPA SAMLAAGAAV TGQVPPAPPT
201: LPGAGMFPNM FPLPTGQSFG GLSMMPIQAM TQQATRHARR VYVGGLSPTA NEQSVATFFS QVMAAVGGNT AGPGDAVVNV YINHEKKFAF VEMRSVEEAS
301: NAMSLDGIIF EGAPVKVRRP SDYNPSLAAT LGPSQPSPHL NLAAVGLTPG ASGGLEGPDR IFVGGLPYYF TESQVRELLE SFGGLKGFDL VKDRETGNSK
401: GYAFCVYQDL SVTDIACAAL NGIKMGDKTL TVRRANQGTM LQKPEQENVL LHAQQQIAFQ RVMLQPGAVA TTVVCLTQVV TEDELRDDEE YGDIMEDMRQ
501: EGGKFGALTN VVIPRPSPNG EPVAGLGKVF LKYADTDGST RARFGMNGRK FGGNEVVAVY YPEDKFEQGD YGA
Arabidopsis Description
U2AF65AATU2AF65A [Source:UniProtKB/TrEMBL;Acc:A0A178UYD2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.