Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G357600.1 | Wheat | nucleus | 94.8 | 94.25 |
| TraesCS3D01G321700.1 | Wheat | nucleus | 93.64 | 93.64 |
| EES01601 | Sorghum | nucleus | 65.32 | 63.84 |
| Zm00001d012584_P001 | Maize | nucleus | 60.69 | 63.64 |
| Zm00001d043204_P001 | Maize | nucleus | 65.9 | 61.29 |
| TraesCS1A01G314200.1 | Wheat | nucleus | 57.8 | 53.19 |
| GSMUA_Achr8P15820_001 | Banana | nucleus | 50.87 | 51.76 |
| Solyc02g077840.1.1 | Tomato | nucleus | 41.62 | 46.75 |
| PGSC0003DMT400076408 | Potato | nucleus | 41.04 | 46.41 |
| VIT_10s0003g00130.t01 | Wine grape | nucleus | 39.31 | 44.74 |
| KRH21385 | Soybean | nucleus | 38.73 | 41.1 |
| KRH10926 | Soybean | nucleus | 39.31 | 39.53 |
| CDY34107 | Canola | nucleus | 39.88 | 38.12 |
| Bra032898.1-P | Field mustard | nucleus | 39.88 | 38.12 |
| Bra010881.1-P | Field mustard | nucleus | 39.88 | 37.5 |
| CDX90145 | Canola | nucleus | 39.88 | 37.5 |
| CDY35734 | Canola | nucleus | 39.88 | 37.3 |
| CDY30806 | Canola | nucleus | 39.31 | 37.16 |
| Bra030094.1-P | Field mustard | nucleus | 38.15 | 37.08 |
| CDY15674 | Canola | nucleus | 38.15 | 37.08 |
| CDX94610 | Canola | nucleus | 35.26 | 36.75 |
| AT1G28360.1 | Thale cress | nucleus | 39.31 | 35.98 |
| TraesCS6A01G171900.1 | Wheat | nucleus | 39.31 | 32.85 |
| TraesCS2A01G542700.1 | Wheat | nucleus | 34.68 | 31.09 |
| TraesCS2A01G427700.1 | Wheat | nucleus | 36.99 | 30.48 |
| TraesCS7A01G436400.1 | Wheat | nucleus | 34.1 | 30.26 |
| TraesCS6A01G131200.1 | Wheat | nucleus | 35.26 | 30.2 |
| TraesCS1A01G314300.1 | Wheat | nucleus | 38.73 | 28.39 |
| TraesCS3A01G328000.1 | Wheat | nucleus | 39.88 | 27.94 |
| TraesCS2A01G288700.1 | Wheat | plastid | 30.64 | 20.23 |
| TraesCS6A01G208700.1 | Wheat | nucleus | 31.79 | 18.39 |
| TraesCS2A01G116900.1 | Wheat | nucleus | 28.32 | 16.39 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF41 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS3A01G328100 | EnsemblPlants:TraesCS3A01G328100.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:573832454..573832975
Molecular Weight (calculated)
18117.5 Da
IEP (calculated)
10.364
GRAVY (calculated)
-0.428
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVLRGAAS LGGGHGQGGA GGGGGGGGGE AHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TFDTPVEAAL AYDRAARTLR GAKAKTNFPG HHHHRPPLQQ
101: QPVPFGGVDL NFPSPWHFVY FSPPAAAPAP RLPQEASPAV PVPPSTALEL GMAPGPAGLP FDLNEPPSLL FGS
101: QPVPFGGVDL NFPSPWHFVY FSPPAAAPAP RLPQEASPAV PVPPSTALEL GMAPGPAGLP FDLNEPPSLL FGS
001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
Arabidopsis Description
ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.