Factsheet for Bra032898.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010171.1-P
Bra012650.1-P
Bra012987.1-P
Bra013940.1-P
Bra019133.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28360.1	Bra010171.1-P	AT1G32540.1	21798944
AT1G28360.1	Bra012650.1-P	AT4G17680.1	21798944
AT1G28360.1	Bra013940.1-P	AT4G26000.1	21798944
AT1G28360.1	Bra019133.1-P	AT4G26000.1	21798944
AT1G28360.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34107	Canola	nucleus	98.89	98.89
Bra010881.1-P	Field mustard	nucleus	80.66	79.35
Bra030094.1-P	Field mustard	nucleus	76.8	78.09
AT1G28360.1	Thale cress	nucleus	77.9	74.6
VIT_10s0003g00130.t01	Wine grape	nucleus	50.28	59.87
KRH21385	Soybean	nucleus	51.38	57.06
Solyc02g077840.1.1	Tomato	nucleus	47.51	55.84
PGSC0003DMT400076408	Potato	nucleus	46.96	55.56
KRH10926	Soybean	nucleus	49.17	51.74
GSMUA_Achr8P15820_001	Banana	nucleus	41.44	44.12
Zm00001d012584_P001	Maize	nucleus	38.12	41.82
TraesCS3D01G321700.1	Wheat	nucleus	38.12	39.88
TraesCS3A01G328100.1	Wheat	nucleus	38.12	39.88
TraesCS3B01G357600.1	Wheat	nucleus	38.12	39.66
EES01601	Sorghum	nucleus	37.57	38.42
Bra027270.1-P	Field mustard	nucleus	33.7	38.12
Bra010880.1-P	Field mustard	nucleus	35.91	37.79
Zm00001d043204_P001	Maize	nucleus	38.67	37.63
Bra030095.1-P	Field mustard	nucleus	34.81	37.5
Bra032900.1-P	Field mustard	nucleus	32.6	37.34
Bra032901.1-P	Field mustard	nucleus	33.15	37.04
Bra039658.1-P	Field mustard	nucleus	34.81	35.8
Os05t0497200-01	Rice	nucleus	37.02	35.45
Bra030957.1-P	Field mustard	nucleus	36.46	34.92
Bra018864.1-P	Field mustard	nucleus	38.67	34.48
Bra038107.1-P	Field mustard	nucleus	37.57	34.0
Bra015266.1-P	Field mustard	nucleus	33.7	33.33
Bra001588.1-P	Field mustard	nucleus	38.12	32.7
TraesCS1D01G314700.1	Wheat	nucleus	33.15	32.61
TraesCS1B01G326500.1	Wheat	nucleus	33.15	32.61
TraesCS1A01G314200.1	Wheat	nucleus	33.7	32.45
Bra021594.1-P	Field mustard	nucleus	38.12	32.39
HORVU1Hr1G067160.1	Barley	nucleus	34.25	32.29
Bra036016.1-P	Field mustard	nucleus	34.25	32.12
Bra001784.1-P	Field mustard	nucleus	38.12	32.09
Bra038261.1-P	Field mustard	nucleus	39.23	31.7
Zm00001d010676_P001	Maize	nucleus	35.36	31.22
Bra035792.1-P	Field mustard	mitochondrion, nucleus	38.67	31.11
Bra006325.1-P	Field mustard	nucleus	32.04	29.59
Zm00001d038584_P001	Maize	nucleus	34.25	29.52
Bra003701.1-P	Field mustard	nucleus	30.94	28.72
KXG22269	Sorghum	nucleus	33.7	28.5
Bra026949.1-P	Field mustard	nucleus	28.73	23.53
Bra006222.1-P	Field mustard	nucleus	25.97	22.27
Bra010901.1-P	Field mustard	nucleus	26.52	20.51
Bra030076.1-P	Field mustard	nucleus	27.07	20.33
Bra026942.1-P	Field mustard	nucleus	29.28	18.03
Bra010972.1-P	Field mustard	nucleus	28.73	17.28
Bra012499.1-P	Field mustard	nucleus	27.62	16.95
Bra019801.1-P	Field mustard	nucleus	29.28	16.31
Bra002168.1-P	Field mustard	nucleus, plastid	27.62	15.77
Bra006466.1-P	Field mustard	nucleus, plastid	26.52	15.48
Bra023684.1-P	Field mustard	nucleus, plastid	26.52	15.34
Bra008793.1-P	Field mustard	nucleus	27.07	15.26
Bra023440.1-P	Field mustard	nucleus	28.18	15.13
Bra032881.1-P	Field mustard	nucleus	3.31	4.17

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra032898
EnsemblPlants:Bra032898.1	EnsemblPlants:Bra032898.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EVR5	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00025424AA
SEG:seg	:	:	:	:	:

Description

AT1G28360 (E=2e-051) ERF12, ATERF12 | ERF12 (ERF DOMAIN PROTEIN 12); DNA binding / transcription factor/ transcription repressor

Coordinates

chrA09:-:11983402..11983947

Molecular Weight (calculated)

19786.5 Da

IEP (calculated)

10.433

GRAVY (calculated)

-0.466

Length

181 amino acids

Sequence
(BLAST)

001: MASTTCGKEV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHIPS PSAAAAAADN HHNHQLWFSA
101: PPPPPPPLRI PGNYRHHGLY LRTGVLNGRT PSTEAPLYFA ASPAAATSSP RVLELLSSSP SSPTARRGLA IDLNEPPPLW L

Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)

001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL

Arabidopsis Description

ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.