Factsheet for Bra026949.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26598	Canola	nucleus	86.43	96.46
CDY16037	Canola	nucleus	81.9	91.41
AT1G12890.1	Thale cress	nucleus	66.52	67.12
GSMUA_Achr6P35320_001	Banana	nucleus	24.43	37.76
KRG91757	Soybean	mitochondrion, nucleus	23.08	35.92
KXG24553	Sorghum	nucleus	26.24	33.72
GSMUA_Achr7P17910_001	Banana	nucleus	24.43	33.33
Os08t0173700-01	Rice	nucleus	26.24	33.14
Solyc04g072300.1.1	Tomato	mitochondrion, nucleus	23.98	33.12
PGSC0003DMT400056527	Potato	nucleus	23.98	33.12
KRH35019	Soybean	nucleus, plastid	23.08	32.48
Bra006222.1-P	Field mustard	nucleus	30.77	32.23
Zm00001d024436_P001	Maize	nucleus	26.24	31.18
Bra027270.1-P	Field mustard	nucleus	21.72	30.0
Bra010880.1-P	Field mustard	nucleus	23.08	29.65
Bra030095.1-P	Field mustard	nucleus	22.17	29.17
Bra032900.1-P	Field mustard	nucleus	20.81	29.11
Bra032898.1-P	Field mustard	nucleus	23.53	28.73
Bra030076.1-P	Field mustard	nucleus	31.22	28.63
Bra032901.1-P	Field mustard	nucleus	20.81	28.4
Bra010901.1-P	Field mustard	nucleus	29.86	28.21
Bra039658.1-P	Field mustard	nucleus	22.17	27.84
Bra001588.1-P	Field mustard	nucleus	25.34	26.54
Bra030094.1-P	Field mustard	nucleus	21.27	26.4
Bra015266.1-P	Field mustard	nucleus	21.72	26.23
Bra030957.1-P	Field mustard	nucleus	22.17	25.93
Bra021594.1-P	Field mustard	nucleus	24.89	25.82
Bra003701.1-P	Field mustard	nucleus	22.62	25.64
Bra010881.1-P	Field mustard	nucleus	21.27	25.54
Bra038107.1-P	Field mustard	nucleus	22.62	25.0
Bra036016.1-P	Field mustard	nucleus	21.72	24.87
Bra001784.1-P	Field mustard	nucleus	23.08	23.72
Bra018864.1-P	Field mustard	nucleus	21.27	23.15
Bra035792.1-P	Field mustard	mitochondrion, nucleus	23.53	23.11
Bra038261.1-P	Field mustard	nucleus	23.08	22.77
Bra006325.1-P	Field mustard	nucleus	19.46	21.94
Bra008793.1-P	Field mustard	nucleus	30.77	21.18
Bra006466.1-P	Field mustard	nucleus, plastid	29.41	20.97
Bra023684.1-P	Field mustard	nucleus, plastid	29.41	20.77
Bra002168.1-P	Field mustard	nucleus, plastid	29.41	20.5
Bra023440.1-P	Field mustard	nucleus	31.22	20.47
Bra026942.1-P	Field mustard	nucleus	25.79	19.39
Bra012499.1-P	Field mustard	nucleus	25.79	19.32
Bra010972.1-P	Field mustard	nucleus	26.24	19.27
Bra019801.1-P	Field mustard	nucleus	25.79	17.54
Bra032881.1-P	Field mustard	nucleus	5.88	9.03

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra026949	EnsemblPlants:Bra026949.1
EnsemblPlants:Bra026949.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4EDT9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF9	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002542F84	SEG:seg

Description

AT1G12890 (E=4e-051) | AP2 domain-containing transcription factor, putative

Coordinates

chrA09:-:34447110..34447775

Molecular Weight (calculated)

24776.6 Da

IEP (calculated)

4.809

GRAVY (calculated)

-0.628

Length

221 amino acids

Sequence
(BLAST)

001: MGKSKQEKKS QEVKYLGVRR RPWGRYAAEI RNPFTKERHW LGTFDTAEEA ALAYDVAARS ISGSLAKTNF FYTDNISLQP QPQQFLQSSS DKAFFANPVA
101: SLEPNMSLGS SSFCFQQENN HFLSSNLTNS FSHCYDDDDH VGKSKEISLP SLPNDMSSSL FSRQDKTEED GNADKMKLGS VLTDEAHCFE YDFLLSGMPL
201: SLLSDYNEDL PQINGSSSSF I

Best Arabidopsis Sequence Match ( AT1G12890.1 )
(BLAST)

001: MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS
101: SSLCLLQDQP FENNHFVADP ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH MKFGSVLSDE PLCFEYDYIG
201: NYLQSFLKDV NDDAPQFLM

Arabidopsis Description

ERF088Ethylene-responsive transcription factor ERF088 [Source:UniProtKB/Swiss-Prot;Acc:Q3E703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.