Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra004926.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15210.1 | Bra004926.1-P | AT2G45640.1 | 16429262 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20105 | Canola | nucleus | 94.84 | 96.65 |
| Bra003701.1-P | Field mustard | nucleus | 76.06 | 83.08 |
| Bra027270.1-P | Field mustard | nucleus | 59.15 | 78.75 |
| Bra001588.1-P | Field mustard | nucleus | 77.0 | 77.73 |
| AT3G15210.1 | Thale cress | nucleus | 78.4 | 75.23 |
| Bra030957.1-P | Field mustard | nucleus | 59.62 | 67.2 |
| Bra039658.1-P | Field mustard | nucleus | 49.77 | 60.23 |
| KRH26242 | Soybean | nucleus | 33.8 | 55.81 |
| Bra010880.1-P | Field mustard | nucleus | 40.38 | 50.0 |
| Bra030095.1-P | Field mustard | nucleus | 39.44 | 50.0 |
| Bra032900.1-P | Field mustard | nucleus | 34.27 | 46.2 |
| Bra038107.1-P | Field mustard | nucleus | 43.19 | 46.0 |
| Bra032901.1-P | Field mustard | nucleus | 33.8 | 44.44 |
| Bra015266.1-P | Field mustard | nucleus | 33.33 | 38.8 |
| Bra036016.1-P | Field mustard | nucleus | 34.74 | 38.34 |
| Bra032898.1-P | Field mustard | nucleus | 32.39 | 38.12 |
| Bra030094.1-P | Field mustard | nucleus | 30.99 | 37.08 |
| Bra010881.1-P | Field mustard | nucleus | 31.46 | 36.41 |
| Bra018864.1-P | Field mustard | nucleus | 34.27 | 35.96 |
| Bra001784.1-P | Field mustard | nucleus | 35.68 | 35.35 |
| Bra035792.1-P | Field mustard | mitochondrion, nucleus | 37.09 | 35.11 |
| Bra006325.1-P | Field mustard | nucleus | 31.92 | 34.69 |
| Bra038261.1-P | Field mustard | nucleus | 35.68 | 33.93 |
| Bra006222.1-P | Field mustard | nucleus | 24.88 | 25.12 |
| Bra026949.1-P | Field mustard | nucleus | 25.82 | 24.89 |
| Bra030076.1-P | Field mustard | nucleus | 23.47 | 20.75 |
| Bra010901.1-P | Field mustard | nucleus | 22.54 | 20.51 |
| Bra026942.1-P | Field mustard | nucleus | 26.29 | 19.05 |
| Bra012499.1-P | Field mustard | nucleus | 25.82 | 18.64 |
| Bra010972.1-P | Field mustard | nucleus | 26.29 | 18.6 |
| Bra019801.1-P | Field mustard | nucleus | 26.76 | 17.54 |
| Bra002168.1-P | Field mustard | nucleus, plastid | 25.82 | 17.35 |
| Bra023684.1-P | Field mustard | nucleus, plastid | 25.35 | 17.25 |
| Bra006466.1-P | Field mustard | nucleus, plastid | 24.88 | 17.1 |
| Bra008793.1-P | Field mustard | nucleus | 25.35 | 16.82 |
| Bra023440.1-P | Field mustard | nucleus | 25.35 | 16.02 |
| Bra032881.1-P | Field mustard | nucleus | 2.35 | 3.47 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlantsGene:Bra021594 | EnsemblPlants:Bra021594.1 |
| EnsemblPlants:Bra021594.1-P | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M4DYJ8 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF42 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0002543FAF | SEG:seg |
Description
AT3G15210 (E=4e-059) ATERF-4, ERF4, RAP2.5, ATERF4 | ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcription repressor
Coordinates
chrA01:-:24305010..24305651
Molecular Weight (calculated)
22831.3 Da
IEP (calculated)
8.879
GRAVY (calculated)
-0.347
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLGLKPDP VHNNAIEIRY RGVRKRPWGR YAAEIRDPGK KTRVWLGTFD TAEAAARAYD KAARDFRGAK AKTNFPNFLE LSENVSIGGG GGFERSPSKT
101: STLYCASPPA AADIVPPPLE LSLGGRGGAC YQIPVARPMY YLDLMGIGNE GRAVQPPMSL ACRSPAMHVA TKVACGGQSD SDSSSVVDFD GGIEKRAQLL
201: DLDLNLPPPL EQA
101: STLYCASPPA AADIVPPPLE LSLGGRGGAC YQIPVARPMY YLDLMGIGNE GRAVQPPMSL ACRSPAMHVA TKVACGGQSD SDSSSVVDFD GGIEKRAQLL
201: DLDLNLPPPL EQA
001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
Arabidopsis Description
ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.