Factsheet for Bra023440.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85621	Canola	nucleus	96.74	95.32
CDX91091	Canola	nucleus	95.55	94.71
Bra008793.1-P	Field mustard	nucleus	83.09	87.23
Bra006222.1-P	Field mustard	nucleus	54.6	87.2
AT5G13910.1	Thale cress	nucleus	51.34	81.99
VIT_14s0068g00860.t01	Wine grape	nucleus	33.23	43.08
KRH06790	Soybean	nucleus	29.67	42.55
KRH70088	Soybean	nucleus	32.34	39.78
PGSC0003DMT400005596	Potato	nucleus, plastid	22.26	38.27
KRH08427	Soybean	nucleus	30.86	37.96
Bra010901.1-P	Field mustard	nucleus	24.33	35.04
Bra030076.1-P	Field mustard	nucleus	24.93	34.85
TraesCS2A01G288700.1	Wheat	plastid	25.82	33.21
HORVU2Hr1G071470.1	Barley	plastid	25.82	33.08
TraesCS2D01G286900.1	Wheat	plastid	25.52	32.82
TraesCS2B01G305500.1	Wheat	plastid	25.52	32.82
Os04t0399800-00	Rice	nucleus	28.19	32.53
Zm00001d003871_P001	Maize	plastid	26.11	32.47
Os02t0520000-00	Rice	nucleus	22.85	32.22
Zm00001d025298_P001	Maize	plastid	25.82	31.99
GSMUA_Achr10P...	Banana	nucleus	24.63	31.8
GSMUA_Achr3P02360_001	Banana	nucleus	25.22	31.6
Zm00001d016623_P001	Maize	nucleus	24.63	31.32
Bra026949.1-P	Field mustard	nucleus	20.47	31.22
Bra032901.1-P	Field mustard	nucleus	14.84	30.86
EES10693	Sorghum	plastid	25.82	30.42
KXG30301	Sorghum	nucleus, plastid	24.63	30.07
Bra027270.1-P	Field mustard	nucleus	14.24	30.0
PGSC0003DMT400005585	Potato	nucleus, plastid	25.82	30.0
Bra030095.1-P	Field mustard	nucleus	14.84	29.76
Bra032900.1-P	Field mustard	nucleus	13.95	29.75
Bra010880.1-P	Field mustard	nucleus	15.13	29.65
Solyc11g045680.1.1	Tomato	nucleus, plastid	25.52	29.55
Bra032898.1-P	Field mustard	nucleus	15.13	28.18
Solyc11g045690.1.1	Tomato	nucleus, plastid	25.22	28.15
Bra030094.1-P	Field mustard	nucleus	14.84	28.09
Bra036016.1-P	Field mustard	nucleus	15.73	27.46
Bra039658.1-P	Field mustard	nucleus	14.24	27.27
Bra038107.1-P	Field mustard	nucleus	16.02	27.0
Bra010881.1-P	Field mustard	nucleus	14.54	26.63
Bra030957.1-P	Field mustard	nucleus	14.84	26.45
Bra015266.1-P	Field mustard	nucleus	14.24	26.23
Bra001588.1-P	Field mustard	nucleus	16.02	25.59
Bra021594.1-P	Field mustard	nucleus	16.02	25.35
Bra018864.1-P	Field mustard	nucleus	14.84	24.63
Bra006325.1-P	Field mustard	nucleus	13.95	23.98
Bra003701.1-P	Field mustard	nucleus	13.65	23.59
Bra001784.1-P	Field mustard	nucleus	14.54	22.79
Bra002168.1-P	Field mustard	nucleus, plastid	21.07	22.4
Bra023684.1-P	Field mustard	nucleus, plastid	20.77	22.36
Bra006466.1-P	Field mustard	nucleus, plastid	20.18	21.94
Bra035792.1-P	Field mustard	mitochondrion, nucleus	14.54	21.78
Bra012499.1-P	Field mustard	nucleus	18.99	21.69
Bra010972.1-P	Field mustard	nucleus	19.29	21.59
Bra038261.1-P	Field mustard	nucleus	14.24	21.43
Bra026942.1-P	Field mustard	nucleus	16.91	19.39
Bra032881.1-P	Field mustard	nucleus	7.42	17.36
Bra019801.1-P	Field mustard	nucleus	16.62	17.23

Protein Annotations

Gene3D:1.10.110.10	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:Bifun_inhib/LTP/seed_sf
InterPro:Bifunc_inhib/LTP/seed_store	EnsemblPlantsGene:Bra023440	EnsemblPlants:Bra023440.1	EnsemblPlants:Bra023440.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4E3T7
PFAM:PF00847	PFAM:PF14368	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF40
SMART:SM00380	SUPFAM:SSF47699	SUPFAM:SSF54171	UniParc:UPI0002543503	SEG:seg	:

Description

AT5G13900 (E=1e-051) | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

Coordinates

chrA02:-:3383237..3384963

Molecular Weight (calculated)

36765.9 Da

IEP (calculated)

5.371

GRAVY (calculated)

-0.486

Length

337 amino acids

Sequence
(BLAST)

001: MNTSKSKKKQ EEAGTKFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAA RSMRGTRART NFVYSDMPPS SSVTSIISPD DPTPTPPPPP
101: PAATPCSDDP VDYLMMFNQY SSTDSPMLQP AQVESSYMFG GSPSCYSNSS SDLPPLPSDL SNSCYSQQPW SVEDYSSANY FEGEYVHSPM FSTMPSVSDS
201: LPQVVANFGI MHTSGQGVSC LNQLAPCLNY LNGTKDVPEV CCNPLKSVIR NNPECLCRMI SNRGSSKAEQ AGINVNDAQM LPARCGEHVN PIACLTRSRG
301: STNADQSSST GNSSSQSYWM TTLAFAVTLL SFILQIN

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.