CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016623_P001	Maize	nucleus	81.16	84.53
Os02t0520000-00	Rice	nucleus	56.52	65.27
EES10693	Sorghum	plastid	56.52	54.55
AT5G13910.1	Thale cress	nucleus	31.52	41.23
Bra006222.1-P	Field mustard	nucleus	30.43	39.81
CDX78545	Canola	nucleus	30.43	39.62
CDX70526	Canola	nucleus	30.07	39.15
PGSC0003DMT400005596	Potato	nucleus, plastid	26.81	37.76
VIT_14s0068g00860.t01	Wine grape	nucleus	35.14	37.31
KRH06790	Soybean	nucleus	31.16	36.6
KRH70088	Soybean	nucleus	36.23	36.5
KRH08427	Soybean	nucleus	36.23	36.5
KXG24553	Sorghum	nucleus	22.1	35.47
EES01601	Sorghum	nucleus	19.57	30.51
Solyc11g045680.1.1	Tomato	nucleus, plastid	30.43	28.87
PGSC0003DMT400005585	Potato	nucleus, plastid	30.07	28.62
OQU82539	Sorghum	nucleus, plastid	19.57	28.42
EER88863	Sorghum	nucleus	19.93	28.21
Solyc11g045690.1.1	Tomato	nucleus, plastid	30.43	27.81
EES06418	Sorghum	nucleus	19.93	25.7
OQU87713	Sorghum	nucleus, plastid	21.74	24.79
Bra023440.1-P	Field mustard	nucleus	30.07	24.63
CDX91091	Canola	nucleus	30.07	24.41
EES14717	Sorghum	nucleus	18.84	24.3
CDX85621	Canola	nucleus	30.07	24.27
KXG22269	Sorghum	nucleus	18.48	23.83
EES11400	Sorghum	nucleus	19.93	23.81
Bra008793.1-P	Field mustard	nucleus	27.54	23.68
CDY72607	Canola	nucleus	27.54	23.53
EES19749	Sorghum	nucleus, plastid	21.74	23.35
KXG36907	Sorghum	nucleus	26.81	22.63
EES14716	Sorghum	plastid	17.03	22.38
OQU80085	Sorghum	plastid	18.48	22.17
EES14715	Sorghum	nucleus	17.39	22.02
EES05354	Sorghum	nucleus	20.29	18.06

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A194YQ31	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KXG30301	ProteinID:KXG30301	ProteinID:KXG30301.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF40	SMART:SM00380	EnsemblPlantsGene:SORBI_3004G159500	SUPFAM:SSF54171	UniParc:UPI0003C68CA9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:50587647..50588562

Molecular Weight (calculated)

29898.7 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.737

Length

276 amino acids

Sequence
(BLAST)

001: MDFSYFFSSS SSSEKKSSTK RRQQQQQHQQ DNNGNETRYL GVRRRPWGRY AAEIRDPATK ERHWLGTFDT AEEAAIAYDR AARNIRGANA RTNFAYPDLP
101: PGSSVTPYLS PDLSADQLQH YYYAAADPVA PAAAHQLATT PDCDHHQSAH GGGAGGNDPV YHQYHHVPVE TTMPSYGGAA DASFMAYGGN AEMGMYCFEG
201: ANNGAAGGGD DRAWCDASEL QFGGHNDDTA AAAAANASHG MYFEEGYLHS PMFSPMPAAD EVVDGFQLGG SSSYYY

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.