CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003871_P001	Maize	plastid	84.62	89.3
Zm00001d025298_P001	Maize	plastid	82.87	87.13
TraesCS2B01G305500.1	Wheat	plastid	69.93	76.34
TraesCS2A01G288700.1	Wheat	plastid	69.23	75.57
HORVU2Hr1G071470.1	Barley	plastid	69.23	75.29
TraesCS2D01G286900.1	Wheat	plastid	68.18	74.43
Os04t0399800-00	Rice	nucleus	64.34	63.01
KXG30301	Sorghum	nucleus, plastid	54.55	56.52
GSMUA_Achr10P...	Banana	nucleus	50.35	55.17
GSMUA_Achr3P02360_001	Banana	nucleus	51.4	54.65
AT5G13910.1	Thale cress	nucleus	31.82	43.13
Bra006222.1-P	Field mustard	nucleus	30.42	41.23
CDX78545	Canola	nucleus	30.42	41.04
KRH06790	Soybean	nucleus	33.57	40.85
CDX70526	Canola	nucleus	30.07	40.57
PGSC0003DMT400005596	Potato	nucleus, plastid	27.62	40.31
KRH70088	Soybean	nucleus	38.11	39.78
KRH08427	Soybean	nucleus	38.11	39.78
VIT_14s0068g00860.t01	Wine grape	nucleus	35.31	38.85
KXG24553	Sorghum	nucleus	19.93	33.14
PGSC0003DMT400005585	Potato	nucleus, plastid	33.22	32.76
Solyc11g045680.1.1	Tomato	nucleus, plastid	32.87	32.3
Solyc11g045690.1.1	Tomato	nucleus, plastid	31.47	29.8
EER88863	Sorghum	nucleus	19.93	29.23
OQU82539	Sorghum	nucleus, plastid	19.23	28.95
EES01601	Sorghum	nucleus	17.83	28.81
EES06418	Sorghum	nucleus	19.58	26.17
Bra023440.1-P	Field mustard	nucleus	30.42	25.82
CDX91091	Canola	nucleus	30.42	25.59
KXG36907	Sorghum	nucleus	29.02	25.38
EES14717	Sorghum	nucleus	18.88	25.23
CDX85621	Canola	nucleus	30.07	25.15
CDY72607	Canola	nucleus	28.32	25.08
Bra008793.1-P	Field mustard	nucleus	27.97	24.92
EES11400	Sorghum	nucleus	19.93	24.68
KXG22269	Sorghum	nucleus	17.48	23.36
OQU87713	Sorghum	nucleus, plastid	19.58	23.14
EES14715	Sorghum	nucleus	17.48	22.94
EES14716	Sorghum	plastid	16.43	22.38
OQU80085	Sorghum	plastid	17.83	22.17
EES19749	Sorghum	nucleus, plastid	19.58	21.79
EES05354	Sorghum	nucleus	20.28	18.71

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8072041	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5YFB1
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES10693	ProteinID:EES10693	ProteinID:EES10693.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF40	SMART:SM00380	EnsemblPlantsGene:SORBI_3006G059800	SUPFAM:SSF54171
UniParc:UPI0001A86B09	RefSeq:XP_002446365.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:40990306..40991166

Molecular Weight (calculated)

29660.1 Da

IEP (calculated)

4.256

GRAVY (calculated)

-0.535

Length

286 amino acids

Sequence
(BLAST)

001: MNFSSYFFSS SSSSSEKKSS SSSSKQRRQQ QQQAQPDANT TRYLGVRRRP WGRYAAEIRD PATKERHWLG TFDTAEEAAV AYDRAARSLR GARARTNFAY
101: PDLPPGSSIT PYLSPDLTSG DNATQLLQPF YAADPAAASS LQAAAAAPPA ANAGAGYGYG AGAGDDYYAS AYGYNDYSAE DMSALMDDLA IPDDLTAEDA
201: GGSVDMYSGG GGGGSGSANA SSGSGGGGWC DASEFSAYGG ASSAASHGVY FEEGYVHSPL FSPMPAVDDA CADGFQLGGS SSSYYY

Best Arabidopsis Sequence Match ( AT5G13910.1 )
(BLAST)

001: MNTTSSKSKK KQDDQVGTRF LGVRRRPWGR YAAEIRDPTT KERHWLGTFD TAEEAALAYD RAARSMRGTR ARTNFVYSDM PPSSSVTSIV SPDDPPPPPP
101: PPAPPSNDPV DYMMMFNQYS STDSPMLQPH CDQVDSYMFG GSQSSNSYCY SNDSSNELPP LPSDLSNSCY SQPQWTWTGD DYSSEYVHSP MFSRMPPVSD
201: SFPQGFNYFG S

Arabidopsis Description

LEPLEP [Source:UniProtKB/TrEMBL;Acc:A0A178UQP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.