CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001907_P001	Maize	nucleus, plastid	82.11	88.64
Zm00001d026563_P001	Maize	nucleus	78.95	84.27
Os04t0669200-01	Rice	nucleus	68.42	68.42
TraesCS2B01G572500.1	Wheat	nucleus	62.63	62.3
TraesCS2D01G543900.1	Wheat	nucleus	62.63	61.66
TraesCS2A01G542700.1	Wheat	nucleus	62.11	61.14
PGSC0003DMT400001820	Potato	nucleus	44.74	43.81
EES06418	Sorghum	nucleus	48.42	42.99
EER88863	Sorghum	nucleus	43.68	42.56
Solyc07g049490.1.1	Tomato	nucleus	44.21	42.42
CDY36045	Canola	nucleus	45.79	40.09
Bra001784.1-P	Field mustard	nucleus	45.26	40.0
CDX82253	Canola	nucleus	45.26	40.0
KRH73797	Soybean	nucleus	46.32	39.64
PGSC0003DMT400036071	Potato	nucleus	39.47	39.47
Solyc12g005960.1.1	Tomato	nucleus	40.0	39.38
KRH14334	Soybean	nucleus	45.79	39.19
Bra038261.1-P	Field mustard	nucleus	44.21	37.5
Bra035792.1-P	Field mustard	mitochondrion, nucleus	43.16	36.44
EES11400	Sorghum	nucleus	44.21	36.36
AT3G20310.1	Thale cress	nucleus	45.26	35.25
VIT_19s0090g01080.t01	Wine grape	nucleus	46.84	34.5
EES14716	Sorghum	plastid	37.37	33.81
EES14715	Sorghum	nucleus	38.42	33.49
EES14717	Sorghum	nucleus	37.37	33.18
EES01601	Sorghum	nucleus	30.0	32.2
OQU80085	Sorghum	plastid	37.89	31.3
OQU87713	Sorghum	nucleus, plastid	39.47	30.99
EES19749	Sorghum	nucleus, plastid	40.53	29.96
KXG22269	Sorghum	nucleus	28.42	25.23
KXG24553	Sorghum	nucleus	22.11	24.42
EES05354	Sorghum	nucleus	33.16	20.32
KXG30301	Sorghum	nucleus, plastid	28.42	19.57
EES10693	Sorghum	plastid	28.95	19.23
KXG36907	Sorghum	nucleus	26.84	15.6

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A1Z5RG23	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:OQU82539	ProteinID:OQU82539	ProteinID:OQU82539.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31677	PANTHER:PTHR31677:SF13	SMART:SM00380	EnsemblPlantsGene:SORBI_3006G259000	SUPFAM:SSF54171	UniParc:UPI0001FCCD5B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:59485847..59487621

Molecular Weight (calculated)

19940.4 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.317

Length

190 amino acids

Sequence
(BLAST)

001: MCDAAVATAA AARYRGVRKR PWGRFAAEIR DPAKRARVWL GTFDSAEAAA RAYDVAARAL RGPLARTNFP AHHLPALTSR PPAAVAAPTC SSSSTVESSS
101: GPRTGVPRAT PAAVHRRRAA AKPRPLRQAA PADADCHSDC ASSASVVDDG DDASTVRSLS CPRPTLDLNL PAPLDVDDSH ELGLCTELRL

Best Arabidopsis Sequence Match ( AT3G20310.1 )
(BLAST)

001: MRKGRGSSVV GPALPVTAGG SVKEPRYRGV RKRPWGRFAA EIRDPLKKSR VWLGTFDSAV DAARAYDTAA RNLRGPKAKT NFPIDCSPSS PLQPLTYLHN
101: QNLCSPPVIQ NQIDPFMDHR LYGGGNFQEQ QQQQIISRPA SSSMSSTVKS CSGPRPMEAA AASSSVAKPL HAIKRYPRTP PVAPEDCHSD CDSSSSVIDD
201: GDDIASSSSR RKTPFQFDLN FPPLDGVDLF AGGIDDLHCT DLRL

Arabidopsis Description

ERF7Ethylene-responsive transcription factor 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.