Factsheet for TraesCS2D01G543900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 23000066

gfp PMID: 23000066 doi

W Dong, X Ai, F Xu, T Quan, S Liu, G Xia

The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Sciences, Shandong University, Jinan 250100, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G572500.1	Wheat	nucleus	93.26	94.24
TraesCS2A01G542700.1	Wheat	nucleus	92.75	92.75
Os04t0669200-01	Rice	nucleus	66.32	67.37
Zm00001d001907_P001	Maize	nucleus, plastid	61.14	67.05
Zm00001d026563_P001	Maize	nucleus	59.07	64.04
OQU82539	Sorghum	nucleus, plastid	61.66	62.63
TraesCS6D01G161300.1	Wheat	nucleus	49.74	46.38
PGSC0003DMT400001820	Potato	nucleus	44.56	44.33
Solyc07g049490.1.1	Tomato	nucleus	44.04	42.93
CDY36045	Canola	nucleus	47.15	41.94
TraesCS2D01G425700.1	Wheat	nucleus	47.15	41.94
KRH73797	Soybean	nucleus	48.19	41.89
Solyc12g005960.1.1	Tomato	nucleus	41.45	41.45
CDX82253	Canola	nucleus	46.11	41.4
PGSC0003DMT400036071	Potato	nucleus	40.41	41.05
KRH14334	Soybean	nucleus	47.15	40.99
Bra001784.1-P	Field mustard	nucleus	45.6	40.93
TraesCS6D01G121100.1	Wheat	nucleus	42.49	40.2
Bra038261.1-P	Field mustard	nucleus	45.6	39.29
Bra035792.1-P	Field mustard	mitochondrion, nucleus	45.6	39.11
TraesCS7D01G426700.1	Wheat	nucleus	39.9	38.69
AT3G20310.1	Thale cress	nucleus	47.15	37.3
TraesCS3D01G321700.1	Wheat	nucleus	32.12	35.84
TraesCS1D01G314700.1	Wheat	nucleus	33.16	34.78
VIT_19s0090g01080.t01	Wine grape	nucleus	45.6	34.11
TraesCS1D01G314800.1	Wheat	nucleus	40.41	33.05
TraesCS3D01G321500.1	Wheat	nucleus	38.34	30.08
TraesCS2D01G286900.1	Wheat	plastid	28.5	20.99
TraesCS6D01G192200.1	Wheat	nucleus	29.02	18.79
TraesCS2D01G118200.1	Wheat	nucleus, plastid	23.83	15.59

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF13	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS2D01G543900	EnsemblPlants:TraesCS2D01G543900.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:621404673..621405254

Molecular Weight (calculated)

20058.5 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.268

Length

193 amino acids

Sequence
(BLAST)

001: MRNGSTVCDA AAAVGLGVAP RYRGVRKRPW GRFAAEIRDP AKRARVWLGT YDSAEAAARA YDVAARTLRG PLATTNFPQD PVSFPTLPTL PHPSRPASPG
101: PACSASSTVE SYSGPRAANA PRAVPRVSAP APLLAERSGG DAGCQSDCAS SASVVDDGGD EAASAAVRPR APFVFDLNLP PPSDELCTEL RLF

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.