Factsheet for TraesCS6D01G161300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G171900.1	Wheat	nucleus	98.07	98.07
TraesCS6B01G199800.1	Wheat	nucleus	96.62	98.04
EES06418	Sorghum	nucleus	75.36	72.9
Zm00001d015639_P001	Maize	nucleus	72.46	71.09
Zm00001d053707_P001	Maize	nucleus	70.53	70.19
PGSC0003DMT400001820	Potato	nucleus	48.31	51.55
Solyc07g049490.1.1	Tomato	nucleus	47.83	50.0
TraesCS2D01G543900.1	Wheat	nucleus	46.38	49.74
KRH73797	Soybean	nucleus	53.14	49.55
CDX82253	Canola	nucleus	50.24	48.37
KRH14334	Soybean	nucleus	51.69	48.2
CDY36045	Canola	nucleus	50.24	47.93
Bra001784.1-P	Field mustard	nucleus	49.76	47.91
Bra038261.1-P	Field mustard	nucleus	51.69	47.77
PGSC0003DMT400036071	Potato	nucleus	42.03	45.79
Solyc12g005960.1.1	Tomato	nucleus	42.51	45.6
Bra035792.1-P	Field mustard	mitochondrion, nucleus	48.79	44.89
AT3G20310.1	Thale cress	nucleus	51.21	43.44
VIT_19s0090g01080.t01	Wine grape	nucleus	51.69	41.47
TraesCS6D01G121100.1	Wheat	nucleus	40.58	41.18
TraesCS7D01G426700.1	Wheat	nucleus	38.65	40.2
TraesCS3D01G321700.1	Wheat	nucleus	33.33	39.88
TraesCS2D01G425700.1	Wheat	nucleus	40.58	38.71
TraesCS1D01G314700.1	Wheat	nucleus	31.88	35.87
TraesCS1D01G314800.1	Wheat	nucleus	38.16	33.47
TraesCS3D01G321500.1	Wheat	nucleus	36.72	30.89
TraesCS2D01G286900.1	Wheat	plastid	28.02	22.14
TraesCS6D01G192200.1	Wheat	nucleus	26.09	18.12
TraesCS2D01G118200.1	Wheat	nucleus, plastid	21.26	14.92

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF41	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6D01G161300	EnsemblPlants:TraesCS6D01G161300.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6D:+:139916253..139916876

Molecular Weight (calculated)

21499.3 Da

IEP (calculated)

7.812

GRAVY (calculated)

-0.239

Length

207 amino acids

Sequence
(BLAST)

001: MRRGGGAATA VAAAAEAERD AGARFRGVRK RPWGRYAAEI RDPAKKARVW LGTFDSAEDA ARAYDAAARM LRGPKAKTNF PLSLPHHHQL QASYSPYPVA
101: AAAAVPTSVA AAAARPACSS LSSTVESFGG PRARPVLPPR PPPPPILDGD CHSDCGSSAS VVDDDCADAA ASPSCGLLLP FDLNLPPEFG GVACNDDDEL
201: KLTALRL

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.