Factsheet for TraesCS6D01G121100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G131200.1	Wheat	nucleus	97.55	98.51
TraesCS6B01G159600.1	Wheat	nucleus	97.55	98.03
Zm00001d053859_P001	Maize	nucleus	72.06	75.0
TraesCS7D01G426700.1	Wheat	nucleus	59.31	60.8
TraesCS2D01G543900.1	Wheat	nucleus	40.2	42.49
Solyc07g049490.1.1	Tomato	nucleus	40.2	41.41
PGSC0003DMT400001820	Potato	nucleus	39.22	41.24
TraesCS6D01G161300.1	Wheat	nucleus	41.18	40.58
PGSC0003DMT400036071	Potato	nucleus	36.76	39.47
Solyc12g005960.1.1	Tomato	nucleus	37.25	39.38
Bra001784.1-P	Field mustard	nucleus	39.71	37.67
CDX82253	Canola	nucleus	39.71	37.67
CDY36045	Canola	nucleus	39.22	36.87
KRH73797	Soybean	nucleus	39.22	36.04
TraesCS2D01G425700.1	Wheat	nucleus	38.24	35.94
Bra038261.1-P	Field mustard	nucleus	39.22	35.71
KRH14334	Soybean	nucleus	38.73	35.59
TraesCS3D01G321700.1	Wheat	nucleus	29.9	35.26
Bra035792.1-P	Field mustard	mitochondrion, nucleus	38.73	35.11
TraesCS1D01G314700.1	Wheat	nucleus	30.39	33.7
AT3G20310.1	Thale cress	nucleus	39.22	32.79
VIT_19s0090g01080.t01	Wine grape	nucleus	41.18	32.56
TraesCS1D01G314800.1	Wheat	nucleus	34.8	30.08
TraesCS3D01G321500.1	Wheat	nucleus	33.82	28.05
TraesCS6D01G192200.1	Wheat	nucleus	32.35	22.15
TraesCS2D01G286900.1	Wheat	plastid	28.43	22.14
TraesCS2D01G118200.1	Wheat	nucleus, plastid	25.49	17.63

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.2	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF13	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6D01G121100	EnsemblPlants:TraesCS6D01G121100.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:86142308..86142922

Molecular Weight (calculated)

20767.1 Da

IEP (calculated)

7.137

GRAVY (calculated)

-0.298

Length

204 amino acids

Sequence
(BLAST)

001: MRRARPPPGP GLEGEEVRYR GVRRRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARAYDA AARNLRGAAA RTNFPASPAA APPRAAPPAP VAAPAAMAAA
101: ATSSHSSTIE SWSGGNVPPT SVLFRAAAAA IGAPAVEEDC RSYCGSSSSA VCEDGASGGA AAAADEAAAP PRPSSSSLPF DLNLPDPAAA ADEMDWRCDT
201: LLRL

Best Arabidopsis Sequence Match ( AT3G15210.1 )
(BLAST)

001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA

Arabidopsis Description

ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.