Factsheet for TraesCS6B01G159600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G121100.1	Wheat	nucleus	98.03	97.55
TraesCS6A01G131200.1	Wheat	nucleus	96.55	97.03
Zm00001d053859_P001	Maize	nucleus	72.41	75.0
TraesCS7B01G335700.1	Wheat	nucleus	59.11	61.86
TraesCS2B01G572500.1	Wheat	nucleus	40.39	42.93
Solyc07g049490.1.1	Tomato	nucleus	40.39	41.41
PGSC0003DMT400001820	Potato	nucleus	39.41	41.24
TraesCS6B01G199800.1	Wheat	nucleus	40.89	40.69
PGSC0003DMT400036071	Potato	nucleus	36.95	39.47
Solyc12g005960.1.1	Tomato	nucleus	37.44	39.38
Bra001784.1-P	Field mustard	nucleus	39.41	37.21
CDX82253	Canola	nucleus	39.41	37.21
CDY36045	Canola	nucleus	38.92	36.41
KRH73797	Soybean	nucleus	39.41	36.04
KRH14334	Soybean	nucleus	38.92	35.59
Bra035792.1-P	Field mustard	mitochondrion, nucleus	39.41	35.56
Bra038261.1-P	Field mustard	nucleus	38.92	35.27
TraesCS2B01G448100.1	Wheat	nucleus	37.93	35.16
TraesCS3B01G357600.1	Wheat	nucleus	30.05	35.06
TraesCS1B01G326500.1	Wheat	nucleus	30.54	33.7
AT3G20310.1	Thale cress	nucleus	38.92	32.38
VIT_19s0090g01080.t01	Wine grape	nucleus	40.89	32.17
TraesCS1B01G326600.1	Wheat	nucleus	34.98	29.58
TraesCS3B01G357500.1	Wheat	nucleus, plastid	33.99	28.4
TraesCS2B01G305500.1	Wheat	plastid	28.57	22.14
TraesCS6B01G237700.1	Wheat	nucleus	32.02	21.81
TraesCS2B01G136100.1	Wheat	nucleus	26.11	17.26

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.2	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF13	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6B01G159600	EnsemblPlants:TraesCS6B01G159600.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:163229482..163230093

Molecular Weight (calculated)

20685.0 Da

IEP (calculated)

7.137

GRAVY (calculated)

-0.266

Length

203 amino acids

Sequence
(BLAST)

001: MRRARPPPGP GLEGEEVRYR GVRRRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARAYDA AARNLRGAAA RTNFPASPAA APPRAAPPAP VAAPATMAAA
101: ATSSHSSTIE SWSGGVPATS VLFRAAAAAA IGAPAVEEDC RSYCGSSSSA VCEDGASGGA AAADEVAAPP RPSSSSLPFD LNLPDPAAAA DEMDWRCDTL
201: LRL

Best Arabidopsis Sequence Match ( AT3G15210.1 )
(BLAST)

001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA

Arabidopsis Description

ERF4Ethylene-responsive transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O80340]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.