Factsheet for TraesCS6B01G199800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G171900.1	Wheat	nucleus	99.02	97.58
TraesCS6D01G161300.1	Wheat	nucleus	98.04	96.62
EES06418	Sorghum	nucleus	76.47	72.9
Zm00001d015639_P001	Maize	nucleus	73.53	71.09
Zm00001d053707_P001	Maize	nucleus	71.57	70.19
TraesCS2B01G572500.1	Wheat	nucleus	48.53	51.83
PGSC0003DMT400001820	Potato	nucleus	49.02	51.55
Solyc07g049490.1.1	Tomato	nucleus	48.53	50.0
KRH73797	Soybean	nucleus	53.92	49.55
CDX82253	Canola	nucleus	50.98	48.37
KRH14334	Soybean	nucleus	52.45	48.2
CDY36045	Canola	nucleus	50.98	47.93
Bra001784.1-P	Field mustard	nucleus	50.49	47.91
Bra038261.1-P	Field mustard	nucleus	52.45	47.77
PGSC0003DMT400036071	Potato	nucleus	42.65	45.79
Solyc12g005960.1.1	Tomato	nucleus	43.14	45.6
Bra035792.1-P	Field mustard	mitochondrion, nucleus	49.51	44.89
AT3G20310.1	Thale cress	nucleus	51.96	43.44
TraesCS7B01G335700.1	Wheat	nucleus	39.71	41.75
VIT_19s0090g01080.t01	Wine grape	nucleus	52.45	41.47
TraesCS6B01G159600.1	Wheat	nucleus	40.69	40.89
TraesCS3B01G357600.1	Wheat	nucleus	33.33	39.08
TraesCS2B01G448100.1	Wheat	nucleus	40.69	37.9
TraesCS1B01G326500.1	Wheat	nucleus	32.35	35.87
TraesCS1B01G326600.1	Wheat	nucleus	38.24	32.5
TraesCS3B01G357500.1	Wheat	nucleus, plastid	36.76	30.86
TraesCS2B01G305500.1	Wheat	plastid	28.43	22.14
TraesCS6B01G237700.1	Wheat	nucleus	26.47	18.12
TraesCS2B01G136100.1	Wheat	nucleus	22.06	14.66

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF41	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6B01G199800	EnsemblPlants:TraesCS6B01G199800.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:239729190..239729804

Molecular Weight (calculated)

21111.8 Da

IEP (calculated)

7.373

GRAVY (calculated)

-0.277

Length

204 amino acids

Sequence
(BLAST)

001: MRRGGGAATA VAAAAEAEGD AGARFRGVRK RPWGRYAAEI RDPAKKARVW LGTFDSAEDA ARAYDAAARM LRGPKAKTNF PLSLPHHHQL PPSYSPYPAA
101: AVPTSVAAAA ARPACSSLSS TVESFGGPRA RPVLPPRPPP PPILDGDCHS DCGSSASVVD DDCADAAASP SCGALLPFDL NLPPEFGGVA CNDDDELKLT
201: ALRL

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.